Mvio000609.1
Basic Information
- Insect
- Metallyticus violacea
- Gene Symbol
- -
- Assembly
- GCA_030762175.1
- Location
- CM060830.1:16968122-16969375[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 2.3 1.8e+03 1.0 0.0 22 45 28 51 22 59 0.84 2 8 0.014 11 8.1 0.0 22 52 140 170 135 172 0.85 3 8 1.6 1.2e+03 1.5 0.0 22 47 168 193 164 198 0.82 4 8 0.031 24 6.9 0.0 22 46 196 219 193 227 0.84 5 8 2.3 1.7e+03 1.0 0.1 22 44 224 246 220 253 0.83 6 8 1.5 1.1e+03 1.6 0.1 19 46 277 303 269 311 0.81 7 8 0.14 1e+02 4.9 0.0 22 49 308 335 303 338 0.84 8 8 0.047 36 6.4 0.0 20 46 334 360 332 366 0.88
Sequence Information
- Coding Sequence
- ATGGAAGGTCTATCTATTTATGTGGAAAATACATCTCCTTCTTTCATTAATGTTATATTGGAAAGCAAAGATGACAAAAAGAAGCAAGTATTCACCTGTATTTTTTGCAACAGCATCTTCACTGACACTTCATCTTTAACagaacatttattaatacatgacTCTAAAACAGCACATAGATGCAAATTCTGTGTTAAAAGTTTTACCCATGAAGCAGACTTgagaaatcatattttgattcatgacgGCAAGAAGGCACATAAGTGTGAAGATTGTGGAAAGAATTTTACCCATGCATACAACTTGAgtaaacatcttttgattcatgagggcaaggaaccacataaatgtgaagtttgtgggaagagctttgccCATGCTTTTACTATAGAGGGACATCTCTTAACTCATAAGTGCAAGAAACCatttaagtgtgaaatttgtggaaagtggTTTACTCAAACATCACATTTGAgaaaacatcttttaattcatgaaggcAAGAAGCCCCATCAGTGTGAAATCTGTGAAAAAGGCTTTACTGATATATCTAAATTGAGGgtgcatcttttgattcatgagggcaagaagccacataagtgtgaagtttgtgggaagagttttacccaAGCATCTAATATGAGGACACATCTTTTGaatcatgagggcaagaagccacataaatgtgatatttgtggGAAAGCCTTTACTCATGCATCTGCTTTGAGGGCACATGCTTTAATTCATAAAGGCAAGAAGgtacataaatgtgaagtgtgtggaAACAGTTTTACCCGAGTATCTCATTTGAAAAGACATCGGTTGATTCATGACAGCAGGAAGCCACATGAGTGTAAATTTTGTAGTAAGAGCTTTGTAGAAGCatctaaattaaagaaacatcttctGAACCACGAGGGAAAAAAGCCCTATAAGTGTGAAATTTGCAGTAAAGGCTTTACTGATATATCTAATTTGAGGGGGCATCTTTTAATTCAtcagggcaagaagccacataagtgtgaaatttgtgggaagggCTTTACCAAAGCATCTAATATGAGAACACATCtcttgattcatgagggcaagaagtcacataagtgtgaagtttgtgggaagagctttacccggaTATCTCATTTGAaagaacatcttttaattcatgagggcaagaaggcACATAGGTGTGATAAATGTGGGAAAGGCTTTACTCGTGCATCTGCTTTGAggaaacatcttttaattcattaa
- Protein Sequence
- MEGLSIYVENTSPSFINVILESKDDKKKQVFTCIFCNSIFTDTSSLTEHLLIHDSKTAHRCKFCVKSFTHEADLRNHILIHDGKKAHKCEDCGKNFTHAYNLSKHLLIHEGKEPHKCEVCGKSFAHAFTIEGHLLTHKCKKPFKCEICGKWFTQTSHLRKHLLIHEGKKPHQCEICEKGFTDISKLRVHLLIHEGKKPHKCEVCGKSFTQASNMRTHLLNHEGKKPHKCDICGKAFTHASALRAHALIHKGKKVHKCEVCGNSFTRVSHLKRHRLIHDSRKPHECKFCSKSFVEASKLKKHLLNHEGKKPYKCEICSKGFTDISNLRGHLLIHQGKKPHKCEICGKGFTKASNMRTHLLIHEGKKSHKCEVCGKSFTRISHLKEHLLIHEGKKAHRCDKCGKGFTRASALRKHLLIH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00995468;
- 90% Identity
- iTF_00995468;
- 80% Identity
- iTF_00995468;