Mvio024808.1
Basic Information
- Insect
- Metallyticus violacea
- Gene Symbol
- -
- Assembly
- GCA_030762175.1
- Location
- CM060837.1:2114065-2115186[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.001 0.79 11.7 0.0 20 52 67 98 61 100 0.85 2 11 2.6 2e+03 0.8 0.0 22 51 96 125 93 128 0.80 3 11 3.6 2.8e+03 0.3 0.0 22 46 124 148 120 156 0.79 4 11 4.6 3.5e+03 0.0 0.0 22 50 152 180 149 183 0.81 5 11 0.032 24 6.9 0.2 21 52 179 210 176 212 0.89 6 11 2.2 1.7e+03 1.0 0.1 22 46 208 232 205 239 0.85 7 11 0.41 3.2e+02 3.4 0.0 22 51 236 265 232 267 0.83 8 11 1 8e+02 2.1 0.0 22 52 264 294 261 296 0.87 9 11 2.3 1.8e+03 1.0 0.1 22 52 292 322 288 323 0.84 10 11 0.37 2.8e+02 3.5 0.0 22 52 320 350 317 351 0.84 11 11 0.22 1.7e+02 4.2 0.0 23 44 349 370 345 373 0.90
Sequence Information
- Coding Sequence
- ATGAGTGTGGAAATTTCATCCATTACTTCTTCTATTGAAGTTAAACAGGATTGCAAAGACGACGCAAAGAAGCAAATATTCTCCTCTAAAGTTAATGGTAGTACTTTCACCAACTTTTCATCTATAAAACGGCATGTATTACTTCATGAACATAAAAGACATAATTTGATGCATGAAATCCAAAAGCAATATAAGTGTAAACTTGAGAAACCACATACATGTGAAGTTTGTGACAAGAGTTTTACCCAGGCATCTAACTTAAGTGAACATcttttgtttcatgaaaataaaccacataaatgtgaaatatgtgggaAGCACTTTACCAAGGTATCCAGCTTGAAGGGACATCTTTtaatgcatgagggtaagaaaccacataaatgtaaagtttgtgacAAGAGCTTTACCCTAACATCTACATTGAAAAGACATCATTTGATTCATGAgggaaagaagccacataaatgtaaactttGTGGGAAGAATTTTATTCAGGTATCCAGCTTGAagggacatcttttgattcatgagggtgagaaaccacataagtgtgaGGTTTGTGGAAAGTGCTTTACTGTATCATCTACGTTGAAaagacatattttgattcatgagtgtaagaaaccacataagtgtgaagtttgtggaaagagctttgcACAGGCATCTCATTTAGGAGAACATCTaatgattcatgagggtaaaagaccacataaatgtgaagtttgtgggaagagctttaccaggGCATCTAACTTGAAGGGACATCTTTTGAtccatgagggtaagaaaccacataagtgtgaattttgtggaaagagctttaccctatcttctacattgaaaaaacatcttttgattcatgagtgtaagaaaccacataagtgtgaagtttgtggaaagagctttgcACAGGTATCTCATTTAGGAGAGCATCttatgattcatgagggtaagaagccacataaatgtgaagtttgtgggaagagctttactagGGCATCTAACTTGAAGgggcatcttttgattcacgaaGGTATaaaaccacataagtgtgaagtttgtggcaagagctttacCCTATCATTTAACTTGAAaagacatattttaattcattaa
- Protein Sequence
- MSVEISSITSSIEVKQDCKDDAKKQIFSSKVNGSTFTNFSSIKRHVLLHEHKRHNLMHEIQKQYKCKLEKPHTCEVCDKSFTQASNLSEHLLFHENKPHKCEICGKHFTKVSSLKGHLLMHEGKKPHKCKVCDKSFTLTSTLKRHHLIHEGKKPHKCKLCGKNFIQVSSLKGHLLIHEGEKPHKCEVCGKCFTVSSTLKRHILIHECKKPHKCEVCGKSFAQASHLGEHLMIHEGKRPHKCEVCGKSFTRASNLKGHLLIHEGKKPHKCEFCGKSFTLSSTLKKHLLIHECKKPHKCEVCGKSFAQVSHLGEHLMIHEGKKPHKCEVCGKSFTRASNLKGHLLIHEGIKPHKCEVCGKSFTLSFNLKRHILIH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00995499;
- 90% Identity
- iTF_00995499;
- 80% Identity
- iTF_00995499;