Mvio016127.1
Basic Information
- Insect
- Metallyticus violacea
- Gene Symbol
- -
- Assembly
- GCA_030762175.1
- Location
- CM060834.1:2545261-2576212[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.25 1.9e+02 4.0 0.0 21 54 97 129 93 129 0.91 2 11 3.2 2.4e+03 0.5 0.0 23 44 126 147 122 152 0.84 3 11 0.45 3.5e+02 3.2 0.1 21 47 152 178 145 185 0.85 4 11 1 7.7e+02 2.1 0.0 23 43 182 202 179 208 0.89 5 11 0.019 15 7.6 0.1 21 43 208 230 205 239 0.88 6 11 0.7 5.3e+02 2.6 0.0 23 46 238 261 231 267 0.85 7 11 2 1.5e+03 1.2 0.0 23 43 266 286 262 292 0.86 8 11 0.0094 7.2 8.6 0.1 21 44 292 315 281 323 0.87 9 11 0.46 3.5e+02 3.2 0.1 24 47 323 346 318 352 0.84 10 11 0.99 7.6e+02 2.1 0.1 23 52 350 379 347 381 0.90 11 11 0.35 2.7e+02 3.6 0.4 23 44 406 427 396 432 0.89
Sequence Information
- Coding Sequence
- ATGAACACCAATGTGCCAATGAACAGCTCTCTGATACTTCCAGGAACATCAGAGGAATGTGGCAGACCTGTGAAATCTTTTGGTGACCTAGTGCATATGATACCAAACAGGTTGGGTATGCATGATTCTCCACAAGGACTGCACATGTGTTGGGCTTGTGGGGACAGATTCTTAGATCTGACTTCACTCAAGGAACACATCTATGTGCACACTGATGTCAAGGTGACTGAAACATTAGGCAAGCAAATGCCTATAATTCCTCAGGATTACCTGCAAGTAGACATAAATTCTGAAAGCCAACTTACATGCAACACGTGTGGTAAAATATTTGCTGATTTAGGAAATCTACATAAACATGAGGTGGTGCATCAAGTAAAACCTCATGTGTGTAACATCTGTGGGCGAGGCTTCAATgctgaaggaaatttaaaaaagcatgaGGTACTTCATGCTGGGGAAAGGCCCTACAAATGCAAGACTTGTGAAAAGACGTTTAGCCAACAAGGAAACCTCCACAAGCATGAACGAATACATACAGGCATAAAACCATATTCTTGTAGTGTTTGTGGCAAGCAGTTCTACCAACAAGGCAATCTGAAAAAGCATGAAGTAATACATACAGGAGAAAAACCTCACTCCTGTCGCATATGTGGCAAGTCTTTCTCTCAGCAGGGCAATATGAGAAAACATGAGCGTAGTCACACTGGCATTAAACCATATAGATGTGATATCTGTGGAAAAGGTTTCACACAAGCAGGAAATGTCAAGAAACACCAGATCCTCCACACAGGACAGATGCCCTACTCCTGCAAAGTCTGTGGCAAACCTTTCTATCAGGAGGGAAACTTGAAAAAGCATGAAGTAACTCACACTGGCGAGAAGCCATATTCTTGTAGCATCTGTTCCAAGCAATTTTCACAGCAAGGAAACATGCGTAAACATGAACGAGTGCATACAGGAATAAGGCCTTATGAGTGTAAAGTGTGTGGTAAATGCTTCACACAGCGGGGAAACCTTAAGAAACACGAGGTTCTGCACTCTGGTTTGAAGCCTTTCTGTTGCAAGACCTGTGGAAAGAGATTCAGCCAGGAAGTGAATCTTCAGAAACACAAGACTGTTCACACAGGGGCCAAACCTTACCCATGCAGGGTATGTGGACGGACATTTTCACAACTAGGCAACATGCTGAAGCATGCAGTGATACACACAGGTAGTAAACCATACCAGTGTAGACTGTGCAGCAAGAGATTCACACAACAAGGAAACCTGCGTAAACATCAGCTAGCCTGCCATTCTGGGATCAAGGCCCTTCTGGGATCATTGAGCACATCCTGTGATGGCAAGAGTTACATAGTGTTTCTCCAAATGGACAGCAACCCAGGACATGTGCAAGCTTTTCTGTCTGTGGCTGTACTGACAGAGTTGTTGTCCTGA
- Protein Sequence
- MNTNVPMNSSLILPGTSEECGRPVKSFGDLVHMIPNRLGMHDSPQGLHMCWACGDRFLDLTSLKEHIYVHTDVKVTETLGKQMPIIPQDYLQVDINSESQLTCNTCGKIFADLGNLHKHEVVHQVKPHVCNICGRGFNAEGNLKKHEVLHAGERPYKCKTCEKTFSQQGNLHKHERIHTGIKPYSCSVCGKQFYQQGNLKKHEVIHTGEKPHSCRICGKSFSQQGNMRKHERSHTGIKPYRCDICGKGFTQAGNVKKHQILHTGQMPYSCKVCGKPFYQEGNLKKHEVTHTGEKPYSCSICSKQFSQQGNMRKHERVHTGIRPYECKVCGKCFTQRGNLKKHEVLHSGLKPFCCKTCGKRFSQEVNLQKHKTVHTGAKPYPCRVCGRTFSQLGNMLKHAVIHTGSKPYQCRLCSKRFTQQGNLRKHQLACHSGIKALLGSLSTSCDGKSYIVFLQMDSNPGHVQAFLSVAVLTELLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00995492;
- 90% Identity
- iTF_00995492;
- 80% Identity
- iTF_00995492;