Mvio021356.1
Basic Information
- Insect
- Metallyticus violacea
- Gene Symbol
- -
- Assembly
- GCA_030762175.1
- Location
- CM060835.1:120410649-120414778[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 9.2 7.1e+03 -1.0 0.0 26 48 145 167 142 172 0.80 2 9 0.12 91 5.1 0.0 22 46 169 193 165 200 0.87 3 9 1.6 1.2e+03 1.5 0.0 26 50 201 225 196 228 0.79 4 9 0.013 10 8.1 0.1 22 48 225 251 222 255 0.84 5 9 0.044 33 6.5 0.0 22 45 253 276 250 283 0.85 6 9 0.029 23 7.0 0.0 22 52 281 311 277 313 0.85 7 9 6.1 4.7e+03 -0.4 0.1 22 46 309 333 306 340 0.82 8 9 0.22 1.7e+02 4.2 0.1 22 47 337 362 334 367 0.83 9 9 0.03 23 7.0 0.1 22 46 365 389 361 396 0.84
Sequence Information
- Coding Sequence
- ATGAATGAACGAAATATGATAGTTGTGGACTCAgccagcagagaggatcaaagCCCAGGAAACCAAAGAGTGGCAGAGAAGAAAAAACAGCAAAAGGAAAGAAGGATAAAGAATGAACAGCTCATGACACCACCAGTCTCCTCAACAGCTGCGCGAGGATGCCAAATGGGAAGCAGCAGgccacATCTGGAAGACCTTTCCAGCCATTCAGGCAACTTATCCACTTCTTTTATTGATGTAGAACACAATTCAGAAATGCTTATACTCCCTTGTAAATCTATTGACAGCACTTTCACTAACTCTTCACCTTTAAATGATTATACATTGATTCATGAACTTAAAAGAAGCAATAAGGGTGAAGTTCATGAAGAGAGCTTTTCTCAGGTATCAACATTAAACAACCAAATTTTGATTCATGATAAGAACCagcataagtgtgaagtttgtggaaagagttttacaaAAGCATCTAATTTGAAAGTACATAtattgattcatgagggcaagaagccacataagtgtgaaatttgtgggaagagcttcaCCCAGACATCAAATTTGGGGTATCATCTTTTAATTCACGAGGGCAAGAAatcacataagtgtgaagtttgtgggaaaaacttCAGCCGTGCATCTGATTTAAGGAAacaccttttgattcatgagggcaagaagccatttaaatgtaaaatatgtgagaaaagctTCACCCAAGCATGTAATTTGAAGAaccatcttttgattcatgagggcaaaaagccaCATAAGTGTAATATTTGTGGAAAGACATTTAACAAGACCTCTAATTTAACAAGACACATTTTGACTCATGAGGGCAATAAACCACATAACTGTATaatttgtgggaagaactttacccaGGCATCTGATTTGAggaaacatattttcattcatgagggcaagaagccgcATAAATGTCAAGTCTGTGgaaaatgctttacaaatgcatcatatttaaaagcccatcttttgatacatgaagGGAAGAGACCACATAAGTGTGaggtttgtgggaagagttttacacATATACGTAATTTGAAGaaccatattttgattcatgaaggcaagaaaccttttaagtgtgaagtttgtgaaaagagTTTTAGGCAGCTGTCTAATTTCAGGATACATCTTTTCactcatgagggcaagaagccacataaatga
- Protein Sequence
- MNERNMIVVDSASREDQSPGNQRVAEKKKQQKERRIKNEQLMTPPVSSTAARGCQMGSSRPHLEDLSSHSGNLSTSFIDVEHNSEMLILPCKSIDSTFTNSSPLNDYTLIHELKRSNKGEVHEESFSQVSTLNNQILIHDKNQHKCEVCGKSFTKASNLKVHILIHEGKKPHKCEICGKSFTQTSNLGYHLLIHEGKKSHKCEVCGKNFSRASDLRKHLLIHEGKKPFKCKICEKSFTQACNLKNHLLIHEGKKPHKCNICGKTFNKTSNLTRHILTHEGNKPHNCIICGKNFTQASDLRKHIFIHEGKKPHKCQVCGKCFTNASYLKAHLLIHEGKRPHKCEVCGKSFTHIRNLKNHILIHEGKKPFKCEVCEKSFRQLSNFRIHLFTHEGKKPHK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00995532;
- 90% Identity
- iTF_00995532;
- 80% Identity
- iTF_00995532;