Mvio013331.1
Basic Information
- Insect
- Metallyticus violacea
- Gene Symbol
- -
- Assembly
- GCA_030762175.1
- Location
- CM060833.1:67762230-67773041[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 2.3 1.8e+03 1.0 0.1 23 44 85 106 81 114 0.80 2 9 0.022 17 7.4 0.0 23 52 113 142 109 143 0.87 3 9 0.079 61 5.7 0.1 22 51 140 169 136 171 0.84 4 9 0.65 5e+02 2.7 0.0 22 47 168 193 164 198 0.83 5 9 0.055 42 6.2 0.0 22 51 196 225 193 227 0.85 6 9 0.17 1.3e+02 4.6 0.0 22 52 224 254 221 255 0.88 7 9 0.22 1.7e+02 4.2 0.1 23 48 253 278 249 284 0.83 8 9 0.54 4.2e+02 3.0 0.0 22 51 308 337 305 339 0.83 9 9 0.14 1.1e+02 4.9 0.0 22 45 336 359 333 362 0.89
Sequence Information
- Coding Sequence
- ATGGATATCAAACTGGAGATTAAGGAAGAACTACTGGACTGTGAAACATATTCACTTGAGTTGAAATCAGAAATTAAGGAGTATAGTTCTTATGATGCTGCTCAAGGTACTTTTTTGGAGCATGAGATTAAGACATCAACTTTGAGTAACAATAGTTTGATTGTTAATAACAAGGAGCCCCATAATGAAGTTTGGAAAAGCTTTACTCAGCCATCTAATTTGAAGAGTCATCTCTTGTTACATGtaggcaagaagccacataagtgtgaaatttgtgggaagagctttaccagAGCATCCAGTTTGAGAGACCATCATTTGATTCATGGGGGAAAAAAGCcctataaatgtgaagtttgtgggaagaactttacccaGGAATGGACATTGAGGAGACATCTcgtgattcatgagggcaagaaaccacataaatgtgaactttgtgggaagagctttactagGGCATCTAATTTGAGGAGccatcttttgattcacgagggaaagaagccccataaatgtgaagtttgtgggaagagctttatccaaGCATCTCATTTGAGGggacatattttgattcatgagggcaaaaagccacataaatgtgaaatttgtggaaaaagctTTACACAAGCATTCACTTTGAGggatcatcttttgattcatgaaggcaagaagccgcataagtgtgaagtttgtgggaagagcttcaCCCAGGTGTCTACTTTAAGGGGACATTTGTTAATTCATGATGGTACAAAgccccataaatgtgaaatttgtggtaagAGGTTTACCAAACCATCTAATTTGAGAAACCATGTTTTGGTTCATGAGGACAAGAAgccccataaatgtgaagtttgtggtaagagctttacaTTGGCAGCTGTTTTGAagggacatcttttgattcataagggcaagaagccacataagtgtgaagtgtgtggaaagagttttacagCATTGTATAATTTGAGGGTACATTTATTGATTCACGAGGGCAAGAAGCCTCATAagtgtaaagtttgtgggaagagctttacccagatgTCTACTTTGAggaaacatcttttaattcatgatggTACATAG
- Protein Sequence
- MDIKLEIKEELLDCETYSLELKSEIKEYSSYDAAQGTFLEHEIKTSTLSNNSLIVNNKEPHNEVWKSFTQPSNLKSHLLLHVGKKPHKCEICGKSFTRASSLRDHHLIHGGKKPYKCEVCGKNFTQEWTLRRHLVIHEGKKPHKCELCGKSFTRASNLRSHLLIHEGKKPHKCEVCGKSFIQASHLRGHILIHEGKKPHKCEICGKSFTQAFTLRDHLLIHEGKKPHKCEVCGKSFTQVSTLRGHLLIHDGTKPHKCEICGKRFTKPSNLRNHVLVHEDKKPHKCEVCGKSFTLAAVLKGHLLIHKGKKPHKCEVCGKSFTALYNLRVHLLIHEGKKPHKCKVCGKSFTQMSTLRKHLLIHDGT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00995487;
- 90% Identity
- iTF_00995487;
- 80% Identity
- iTF_00995487;