Mvio000620.1
Basic Information
- Insect
- Metallyticus violacea
- Gene Symbol
- -
- Assembly
- GCA_030762175.1
- Location
- CM060830.1:17147366-17148640[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 9 6.9e+03 -0.9 0.0 23 47 56 80 53 86 0.76 2 13 0.071 54 5.8 0.0 23 51 84 112 80 114 0.84 3 13 0.15 1.1e+02 4.8 0.0 22 52 111 141 108 142 0.86 4 13 0.082 63 5.6 0.0 22 46 139 163 135 170 0.86 5 13 0.23 1.7e+02 4.2 0.0 22 51 167 195 164 198 0.84 6 13 0.097 74 5.4 0.1 22 46 195 219 191 227 0.86 7 13 5.4 4.2e+03 -0.2 0.0 26 50 227 251 220 254 0.78 8 13 0.23 1.8e+02 4.2 0.3 22 51 251 280 248 282 0.84 9 13 0.19 1.5e+02 4.4 0.0 22 52 279 309 275 314 0.85 10 13 9.5 7.3e+03 -1.0 0.0 22 45 307 330 304 337 0.77 11 13 1.6 1.2e+03 1.5 0.1 22 46 335 359 331 367 0.83 12 13 2.4 1.8e+03 0.9 0.0 26 52 367 393 360 395 0.81 13 13 0.64 4.9e+02 2.7 0.0 22 45 391 414 387 420 0.88
Sequence Information
- Coding Sequence
- ATGGCACATAGATGCAGTTTCTATGTAAATAGTTTTACTGAAACCTCAaccttgaaaaataatattttgattcatgaagacAAGAAGGGCCATGAATGTGAATTTTGTAGCAAGAGTTTTGCAAAAACATCTTTGAGAgatcatattttgattcatgagggcaagagaCCCCATATATGTGaattttgtggaaagagctttattcATGCATCTTATTTGAGGAAAcacattttgattcatgagggtaggAAGCcctataaatgtgaaatatgtggaaAAGGCTTTACTGACACATCCAATTTGAgggcacatcttttgattcatgatggCAAGAAACCCCATAATTGTGAAATATGTGGGAAAGGCTTTACTAGTTCATCTAATTTCAGGATGCATTTTTTGATGCATAAGGGCAACAAGCCacacaaatgtgaaatttgtgggaaaagctttacccaAGCATTTTCTCTGAGAGaccatcttttgattcatgagggcaagaggCCCCACATGTGTGaactttgtggaaagagttttactaAAGGATGtaatttgaagaaacatcttttgactcatgaggccaagaagccacataagtgtgagaTTTGTGGCAAGAGCTTTATCCAAGCATCTTATTTgagggaacatcttttgattcatgagggcaagaagtcACACATGTGTGAactttgtggaaagagctttacccatgCATCATATTTGAGGAAGCATCTGTTggttcatgagggcaagaagccacataaatgtgaagtttgtggcaagagATTTACTCAAGCATTTTGTTTGAGGCAACATCtattgattcatgagggcaagaagccacataagtgtgaactttgtggcaagagctttacCCAAGCATCTACTTTGAGGggtcatcttttgattcatgagggcaagaagccacataagtgcgGAGTTTGTGGGAAGTGCTTTACCCATGCTATTACGTTGAAGGGACATCTCTTAACTCACGAGTGCAAGAAACCATTTAAGTGTGAAGTGTGTGGGAAAAACATGACCCGAATATCTTATTTGCggaaacatcttttaattcatgagggcaagaaatcTCATATCTGTGaactttgtggaaagagttttacgcATGCATCTTATTTGAGGAAACATCTTGTGGTTCATGAGGCCAAGAAGCCACATatgtgtgaagtttgtggcaagagctttacCCAAGTATTTGGCTTGAGGAATCATCTTTTTATTCATGCGGGCAAGAAACACCATAATTCATAA
- Protein Sequence
- MAHRCSFYVNSFTETSTLKNNILIHEDKKGHECEFCSKSFAKTSLRDHILIHEGKRPHICEFCGKSFIHASYLRKHILIHEGRKPYKCEICGKGFTDTSNLRAHLLIHDGKKPHNCEICGKGFTSSSNFRMHFLMHKGNKPHKCEICGKSFTQAFSLRDHLLIHEGKRPHMCELCGKSFTKGCNLKKHLLTHEAKKPHKCEICGKSFIQASYLREHLLIHEGKKSHMCELCGKSFTHASYLRKHLLVHEGKKPHKCEVCGKRFTQAFCLRQHLLIHEGKKPHKCELCGKSFTQASTLRGHLLIHEGKKPHKCGVCGKCFTHAITLKGHLLTHECKKPFKCEVCGKNMTRISYLRKHLLIHEGKKSHICELCGKSFTHASYLRKHLVVHEAKKPHMCEVCGKSFTQVFGLRNHLFIHAGKKHHNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00995466;
- 90% Identity
- iTF_00995466;
- 80% Identity
- iTF_00995466;