Mvio043096.1
Basic Information
- Insect
- Metallyticus violacea
- Gene Symbol
- -
- Assembly
- GCA_030762175.1
- Location
- CM060843.1:99830167-99830943[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.43 3.3e+02 3.3 0.0 22 47 102 127 96 132 0.85 2 4 0.0053 4.1 9.4 0.0 21 47 129 155 124 161 0.85 3 4 0.0086 6.6 8.7 0.1 21 45 157 181 152 186 0.87 4 4 0.016 12 7.9 0.0 21 45 186 210 180 215 0.88
Sequence Information
- Coding Sequence
- ATGTGGGGAGACCTCCAGCAGGGGGTTCCTGGAAGAGCAGGAAGCAGAGCCTCAGTTTGGGGGGAAGTAACTACACAGCATGTTCGTGAGTTATGGCAAGAATTCTTGCTGCCACTTAGCCATGCTCCTCCACCTCCTTGTGCTATGCCTGTTACTACTAGCATATCTACCACACCTACTATAACAAGCAACTCTGCAACTGTGACAGAACAGCAATCCTGCATAATGTGCCTCAAGAGCACACCTTCAACTCCCACCAGCACACCTTCACCTCCTAATAATGCTGCTCGCTTGCATCCAGGAGACCGCCCATTCAGCTGTGATGTCTGTGGCAAAGGTTTTACTCAGGCAGCACACCTGACACGACACACCAGAGTGCACACAGGGGAAAAGCCTTTCTCATGTGCTGTGTGTGGCAAATGCTTTTCACAATCAGGAGATTTGACTCGTCATGCTCGTGTTCACACTGGTGAGAAGCCATATTCATGCTCTGTGTGCCTGAAGCGATTTTCACAGTCAGGCGATCTAAGTCGACATACTCGGCGTGCCCATCCTGGAGAGAATCCCTTTTCATGTGCAGTGTGCCTCAAGAGTTTCTCACAATCAGGAGGTCTGACACGACACACTCGTGTCCATGCCACATCAAGTACTTCTCAGCCTACACCAGAACCCACGTCTTCGGAGGCAAATGTATCTTGTTCATCCACACAAAGTGCACAGGCAAGACAGTTCTTTCCAGATGTTATGTCCAAGAACTTTTCTCCATCTGTACCCTGA
- Protein Sequence
- MWGDLQQGVPGRAGSRASVWGEVTTQHVRELWQEFLLPLSHAPPPPCAMPVTTSISTTPTITSNSATVTEQQSCIMCLKSTPSTPTSTPSPPNNAARLHPGDRPFSCDVCGKGFTQAAHLTRHTRVHTGEKPFSCAVCGKCFSQSGDLTRHARVHTGEKPYSCSVCLKRFSQSGDLSRHTRRAHPGENPFSCAVCLKSFSQSGGLTRHTRVHATSSTSQPTPEPTSSEANVSCSSTQSAQARQFFPDVMSKNFSPSVP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00995742;
- 90% Identity
- iTF_00995742;
- 80% Identity
- iTF_00995742;