Mvio005262.1
Basic Information
- Insect
- Metallyticus violacea
- Gene Symbol
- -
- Assembly
- GCA_030762175.1
- Location
- CM060831.1:80558048-80588124[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.081 62 5.6 0.0 22 46 141 165 137 172 0.88 2 10 5.7 4.3e+03 -0.3 0.0 26 51 201 226 197 228 0.79 3 10 0.011 8.1 8.4 0.1 22 44 225 247 221 254 0.90 4 10 0.32 2.5e+02 3.7 0.0 22 52 281 311 277 313 0.87 5 10 0.75 5.7e+02 2.5 0.0 22 52 309 339 306 341 0.84 6 10 0.09 69 5.5 0.1 22 52 337 367 334 368 0.88 7 10 1.1 8.1e+02 2.0 0.1 22 51 365 394 362 396 0.83 8 10 2.8 2.2e+03 0.7 0.0 22 46 393 417 390 422 0.87 9 10 0.0052 4 9.4 0.1 22 52 449 479 445 481 0.85 10 10 8.5 6.5e+03 -0.9 0.0 23 45 478 500 474 506 0.83
Sequence Information
- Coding Sequence
- atggacTCAAAGCTACAGATTAAGGAAGAACCCTTATATTGTGATATGACTGTGCTGGAGTTGAAACCAGGAAGTGAGGAAGAAAGCTTCTCTAGTACTACTCATGACACTAAAGTAAAATCTGAGAGGTTGATAAACGAATGCAGTGATTATGAGAAAATAGATTGCAAATTAGAGTTCAAGGAAGAACTACTGGACCCCCAAAAAGATCCAATGgaactcaaattcaaaattatagaaGAGATTACAAATAATGATGGCCAGGATACTTGGTTGAAGAATGAGGAGCGAAAGGAACGTGACGTAGCTTTAATGAAGGATGAGATCACAATTGAGGAATCAGATGTTCCATACCGTGATCAAGGTAAGAGCTTTACCAGTGCATCTTAtttgaggaaacatcttttgattcatgagggaaaaaagccacataagtgtgaaatttgtggtaagAGCTTTGTCCAAGCATCTGGCTTGAGGCAACATCTTATGATTCATGAGGGCAGAAAGTCCCACAAGTGTGacgtttgtggaaagagctttaacCATATATCTTATTTGAAGCAACATCTTATGATTCATGAGGACAGAAAGTCCCACAAGTGTGAAGTTTGCAGTAAGAACTTTACCAGTGCATCTTAtttgaggaaacatcttttgattcatgagggcaaaaagccacataagtgtgaaatttgtgggaagagctttatccaaGCATCTAATTTGAGGCAACATCTTTTCAGTCATGAAGGCAAAAAGTCCcataaatgtgaggtttgtggaaagagctttaacAATCCATCTTATTTGAGGgtacatcttttaattcatgatggcaaaaagccacataagtgtgaagtttgtgaaaagagcTTTATTCAGGCGTCTTATTTGAAGAAGCATCttatgattcatgagggcaagaagccacataagtgtgaagtttgtggaaagagttttacctATGCATCTGATTTGCggcaacatcttttgattcatgaaggcaagaagccacataaatgtgcagtttgtggaaagagctttgtACAAGTATCTAAACTGAGGCAACATCttatgattcatgagggcaataagccacataaatgtgaagtttgtggaaagagttacACCTATGCATCTGATTTAAGgcaacatcttttgatacatgagggcaagaagccgcacaagtgtgaagtttgtggaaagagctttacctaCGCATCTAATTTGAAGCCACATCTAATGATTCACGAGGACATAAAACtgcataagtgtgaagtttgtggaaagagttttatccGAGCATTTCATTTGAAGCAACATCTAATGATTCATGAAGGCAAAAAGCCCCATAACTGTGAAAtatgtggaaagagctttatccaGACATCAAATTTGAGgacacatcttttaattcatgagggcaaaaagccccataagtgtgaattttgtggaaagagctttacccttGCATCTGGTTTGAgaaaacatcttttaattcatcaaGGCAAAGAACCCATAAGATGGACTGCCGCTATAGGATGCATTGTTCCAATTAGGTCAAATCTACTCAGTCATGCTACCCATGCTAAAGCTATGGCCACAAAGTGCAGGATTGCACTGAACCAGCCAAGGCCCTCACCTGGGAGTGCAAGCAGCATGACTTGGCCCACTGCTGCAGATTTTGTGTCTCCTAGCCAGGCCGCCTGCCCACTCCAGCACCTCAGCCACCATCCAGCATCTCTACCTACTTCGTCTTTCTAG
- Protein Sequence
- MDSKLQIKEEPLYCDMTVLELKPGSEEESFSSTTHDTKVKSERLINECSDYEKIDCKLEFKEELLDPQKDPMELKFKIIEEITNNDGQDTWLKNEERKERDVALMKDEITIEESDVPYRDQGKSFTSASYLRKHLLIHEGKKPHKCEICGKSFVQASGLRQHLMIHEGRKSHKCDVCGKSFNHISYLKQHLMIHEDRKSHKCEVCSKNFTSASYLRKHLLIHEGKKPHKCEICGKSFIQASNLRQHLFSHEGKKSHKCEVCGKSFNNPSYLRVHLLIHDGKKPHKCEVCEKSFIQASYLKKHLMIHEGKKPHKCEVCGKSFTYASDLRQHLLIHEGKKPHKCAVCGKSFVQVSKLRQHLMIHEGNKPHKCEVCGKSYTYASDLRQHLLIHEGKKPHKCEVCGKSFTYASNLKPHLMIHEDIKLHKCEVCGKSFIRAFHLKQHLMIHEGKKPHNCEICGKSFIQTSNLRTHLLIHEGKKPHKCEFCGKSFTLASGLRKHLLIHQGKEPIRWTAAIGCIVPIRSNLLSHATHAKAMATKCRIALNQPRPSPGSASSMTWPTAADFVSPSQAACPLQHLSHHPASLPTSSF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00995450;
- 90% Identity
- iTF_00995450;
- 80% Identity
- iTF_00995450;