Mvio000611.1
Basic Information
- Insect
- Metallyticus violacea
- Gene Symbol
- -
- Assembly
- GCA_030762175.1
- Location
- CM060830.1:17032862-17034274[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.29 2.2e+02 3.9 0.0 26 51 56 81 51 82 0.84 2 11 0.31 2.3e+02 3.8 0.1 20 45 78 103 75 109 0.87 3 11 0.15 1.2e+02 4.7 0.0 23 52 137 166 132 168 0.85 4 11 0.02 15 7.6 0.0 21 46 191 216 186 223 0.89 5 11 6.2 4.7e+03 -0.4 0.1 23 45 249 271 245 279 0.73 6 11 0.17 1.3e+02 4.6 0.0 26 52 280 306 273 307 0.85 7 11 0.41 3.1e+02 3.4 0.1 22 46 304 328 299 336 0.85 8 11 3.9 3e+03 0.2 0.0 23 45 361 383 353 390 0.81 9 11 0.015 12 8.0 0.0 22 52 388 418 384 420 0.85 10 11 0.65 5e+02 2.7 0.0 22 47 416 441 412 446 0.84 11 11 0.63 4.8e+02 2.8 0.2 22 43 444 465 441 469 0.88
Sequence Information
- Coding Sequence
- ATGGCACATAAATGCAAATTCTGTGTGAAAAGTTTTACTCGGACAACGGCCTtgagaaatcatattttgaagaagcACAATGAATGTGAAGTTTTTCAAAAGAGCTTTACCCAAGCATCTTCTTTGAGGAaccatcttttgattcatgaagacAGAAAGCTGCAtatgtgtgaagtttgtggaaagagttttgcCCAAGCATCAAATTTgaaggaacatcttttgattcatcagagcaagaagccacataagtgtgaagtttgtgccAAGAGCTTTACTCGAACATCTTCTTTAAAAgatcatcttttgatacatgatgGCAAGAAACTCCATCTGTGTAAACtatgtggaaagagttttacccaTGCATCCTACTTGAGGAAGCATATTGTAATTCATGAAGGCAGGAAGCCCTATAAGTGTGAAATATGTGGAAAAGGCTTTGCTGCAGCATCTAATTTGAGGgtacatcttttgatacatgagggcaagaaaccacataaatgcaaaatttgtggaaagagctttacccatgCTTTTACTTTGAAGGGACATCTCTTAACTCATGAGTGTGAAAAACCATTTAAGTGCGAAGTTTGTGGGAATGGGTTTACCCAGGCATCTCATTTGAGGAAACaccttttaattcatgagggcaaaaagacCCATAAGTGTCAAATTTGTGGAAAAGGCTTTACTGATGCATCTAAATTGAAGTGGCATCTTTTGGTTCATGAGGGCATTAAACCACATAAGTGTAatgtttgtgggaagagctttatccgGGCATCTCATTTGAAAgagcatcttttgattcatgagggcaagaaggcacataaatgtgatatttgtgggaaaagctttactgGCGCATCTAATTTGAGAGCTCATCTTTCAATTCATGAAGGCaaaaagccacataagtgtgaaatttgtggaaagagctttacccggGCATCTCATTTGAgagaacatcttttgattcatgagggcaggaaggcacataagtgtgaagtttgtggaaagaattTTACCCAATTATCTCATTTGAGGGGACATAGTTTGGTTCATGATGAAAAGAAGCCATATGAGTGTGAATTTTGTGGAAAGGGCTTTGCTGAGGCATCTAAATTAAGAAAGCATCTTCTTAACCATAAGGGCAACAAGccccataagtgtgaaatttgtgggaaaggCTTCACTGACTCATCTAATTAtagaaaacatcttttgattcatgagggcaagaagccacataaatgtaaattttgtgggaagagctttacacagGCATATTCTTTAAGGGGACATCTTTTggttcatgagggcaaaaagccatataattgtgaaatttgtgagaaaaattttgctcaggcaCATCAATTGAGGGTTCATCAATTAGTTCATAGGTAA
- Protein Sequence
- MAHKCKFCVKSFTRTTALRNHILKKHNECEVFQKSFTQASSLRNHLLIHEDRKLHMCEVCGKSFAQASNLKEHLLIHQSKKPHKCEVCAKSFTRTSSLKDHLLIHDGKKLHLCKLCGKSFTHASYLRKHIVIHEGRKPYKCEICGKGFAAASNLRVHLLIHEGKKPHKCKICGKSFTHAFTLKGHLLTHECEKPFKCEVCGNGFTQASHLRKHLLIHEGKKTHKCQICGKGFTDASKLKWHLLVHEGIKPHKCNVCGKSFIRASHLKEHLLIHEGKKAHKCDICGKSFTGASNLRAHLSIHEGKKPHKCEICGKSFTRASHLREHLLIHEGRKAHKCEVCGKNFTQLSHLRGHSLVHDEKKPYECEFCGKGFAEASKLRKHLLNHKGNKPHKCEICGKGFTDSSNYRKHLLIHEGKKPHKCKFCGKSFTQAYSLRGHLLVHEGKKPYNCEICEKNFAQAHQLRVHQLVHR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00995420;
- 90% Identity
- iTF_00995420;
- 80% Identity
- iTF_00995420;