Mvio005390.1
Basic Information
- Insect
- Metallyticus violacea
- Gene Symbol
- -
- Assembly
- GCA_030762175.1
- Location
- CM060831.1:84967594-84969120[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.41 3.1e+02 3.4 0.1 22 48 71 97 67 101 0.83 2 14 0.28 2.1e+02 3.9 0.1 22 52 99 129 96 131 0.86 3 14 5.6 4.3e+03 -0.3 0.0 23 45 128 150 123 154 0.87 4 14 0.016 13 7.8 0.0 21 46 154 179 146 190 0.88 5 14 9.8 7.5e+03 -1.0 0.0 26 44 187 205 181 210 0.86 6 14 0.035 26 6.8 0.1 23 51 212 240 207 242 0.84 7 14 0.35 2.7e+02 3.6 0.1 22 52 239 269 235 271 0.85 8 14 2.5 1.9e+03 0.9 0.1 22 51 295 324 286 326 0.83 9 14 0.0074 5.6 9.0 0.1 22 51 323 352 319 354 0.85 10 14 1.6 1.2e+03 1.5 0.1 23 46 352 375 348 382 0.85 11 14 0.36 2.8e+02 3.5 0.1 26 51 383 408 376 410 0.82 12 14 0.19 1.4e+02 4.5 0.0 22 52 407 437 404 439 0.84 13 14 0.48 3.6e+02 3.2 0.0 22 47 435 460 432 466 0.84 14 14 0.52 4e+02 3.0 0.0 23 48 464 489 462 494 0.84
Sequence Information
- Coding Sequence
- ATGGAGAAAGCTCACTTAAGgagtcatcttttgattcatgatggtatgaagccacataaatgtgaagattgtgggaagagctttattcGGAAATATGATTTAAAGAGacaccttttgattcatgagggtaagaaaaaacataaatgtgaaatttgtgggaagagcttttcCTACACATACTTAAGGACACACCTTTTAAATCATGAGGGTAAggagccacataaatgtgaagtttgtggaaagagctttacatTGACATGTAatttaaggacacatcttttgattcatgagggtaagaagccacataaatgtgaagtttgtgggaagagctttatccagAAAGCTCATTTAAggaatcatcttttgattcatgagggtatgaagccacataaatgtgaagtttgtggaaagagctttacccggACACATATTTTAAGAagtcatcttttgatacataaggatgagaagccacataaatgtgaaatatgtgggaAGGGCTTTACTACAGCATCTAATTTAAggaatcatcttttgattcatgaaggtaagaaatcATATAAATGTGGAGTTTGTGGGAAGAAATTTACCCAGATATCTACTTTAAGAGAACATCTTTTGACTCATGAGGGTACAatgccacataaatgtaaagtttgtgggaagatCTTTACCCGCACAACTAATTTAAGgagtcatcttttgattcacgagggtaagaagccacataaatgtgaagtttgtggaaagagttttatccAGAAAGCTCATTTAAGGAGTCATCTTTTGATCCATGAGGGtaaaaagccacataaatgtgaagtttgtgggaagaccTTTACCATGATATCTACTTTAAGGACACATAGTTTgtttcatgagggtaagaagccacataaatgtgaagtttgtggaaagagctttacactgacatctcatttaaggacacatcttttaattcatgagggtaagaagccgcataaatgtgaagtttgtgggaagagctttacccaggcaactagtttaaggagacatcttttgattcacgagggtaggaagccacataaatgtgaaatctGTGGGAAGAGCTTTGTGGAGAAAACTCATTTGAggaatcatcttttgattcatgaaggtaagaaggcacataaatgtgaagtttgtgggaagagctttactcagaaaTGTGATTtaaagagacatcttttgattcatgagggtaagaaaccacataaatgtgaagtttgtggaaagagctttacagtgacatctaatttaaggacacatcttttgattcatgagggtaagaagccacataaatgtgaagtttgtgggaagagctttatccagAAGCCTGATTTAAGAAGTCATCTTATGATTCATGTTGGTttgaagccacataaatgtgaagtttgtgggaagagctttactcagaaatatgatttaaagagacatttttttattcatgagggtaagaaaccacttAAAAGTGAAGTGTGTGGAGAGAAATTCACCCAGTCTTctcattga
- Protein Sequence
- MEKAHLRSHLLIHDGMKPHKCEDCGKSFIRKYDLKRHLLIHEGKKKHKCEICGKSFSYTYLRTHLLNHEGKEPHKCEVCGKSFTLTCNLRTHLLIHEGKKPHKCEVCGKSFIQKAHLRNHLLIHEGMKPHKCEVCGKSFTRTHILRSHLLIHKDEKPHKCEICGKGFTTASNLRNHLLIHEGKKSYKCGVCGKKFTQISTLREHLLTHEGTMPHKCKVCGKIFTRTTNLRSHLLIHEGKKPHKCEVCGKSFIQKAHLRSHLLIHEGKKPHKCEVCGKTFTMISTLRTHSLFHEGKKPHKCEVCGKSFTLTSHLRTHLLIHEGKKPHKCEVCGKSFTQATSLRRHLLIHEGRKPHKCEICGKSFVEKTHLRNHLLIHEGKKAHKCEVCGKSFTQKCDLKRHLLIHEGKKPHKCEVCGKSFTVTSNLRTHLLIHEGKKPHKCEVCGKSFIQKPDLRSHLMIHVGLKPHKCEVCGKSFTQKYDLKRHFFIHEGKKPLKSEVCGEKFTQSSH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00995429;
- 90% Identity
- iTF_00995429;
- 80% Identity
- iTF_00995429;