Mvio000210.1
Basic Information
- Insect
- Metallyticus violacea
- Gene Symbol
- -
- Assembly
- GCA_030762175.1
- Location
- CM060830.1:5452370-5453611[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.37 2.8e+02 3.5 0.0 23 52 47 76 44 78 0.86 2 11 0.14 1.1e+02 4.9 0.1 26 52 106 132 99 134 0.88 3 11 0.42 3.2e+02 3.3 0.1 22 45 158 181 150 189 0.83 4 11 3.6 2.7e+03 0.4 0.1 22 45 186 209 179 217 0.82 5 11 0.39 3e+02 3.4 0.1 22 48 214 240 205 244 0.84 6 11 0.0076 5.8 8.9 0.1 22 46 242 266 238 273 0.88 7 11 0.72 5.5e+02 2.6 0.1 26 52 274 300 268 301 0.84 8 11 0.12 93 5.1 0.1 22 51 298 327 294 329 0.85 9 11 0.74 5.7e+02 2.5 0.0 22 48 326 352 323 356 0.83 10 11 0.0036 2.8 9.9 0.1 22 51 354 383 351 385 0.85 11 11 0.022 17 7.4 0.1 22 51 382 411 378 413 0.85
Sequence Information
- Coding Sequence
- ATGTTCACTGACCCTCCATCTTTAAAAgatcatttattaattcatgactctgaaaaaaaatataaatgtgaattctGTGAAAAAGGTTTTACTCGGGCATCAGCCTTGAAAAACCATGTTTTGATTCATGGGGGCAAGACACCAcctaagtgtgaagtttgtggaaagagttttactcATTCATCTTATTTGAGGACACATCttatgattcatgagggcaagaagccacataaatgtaaagtatgtggaaagagttttacccaTGCAAGTGCTTTGAGGGCACATCGTTTGATTCATGAAGACAAGAAGCtacataagtgtgaaatttgtggaaagagctttttCCAAGCATCATATTTGAGGCAACATCTTTTgcttcatgagggcaagaagccacataaatgtgaagtttgtgaaaagagcTTTATCCGCCCATCTTACTTGAGGGATCATcgtttgattcatgagggcaagaagccacataagtgtgaaatttgtgggaagagttttacccaAACATCTTACTTAAGGGATCATCGTTTGATTCATGAGGGAAAGAAGCCGCATAAGTGTgaattttgtgggaagagctttaaccGCTCATCTACTTTGAGGGCACATCGTTttattcatgagggcaagaagccacataagtgtgaagtttgcgGAAAGAGCTTTATCCAAGCATCTTATTTGAGGCAACATTttatgattcatgagggcaagaagccacataagtgtgaagtttgtggaaagagctttatacAAGCATATAATTTGAGGAAACATCTTATGATTCACGAGGGCAAGAAGcgacataagtgtgaagtttgtggaaagagctttatacAAGCATCTTATTTGAGGCAACATCTTATGATTCACGAGGGCAAGAAGCCGCATAAATGTCaactttgtggaaagagttttacccaAGCATCTACTTTGAgagaacatcttttgattcatgagggcaagaagccacaaaagtgtgaagtttgtggaaagagttttacccaTGCAAATACTTTGAGggcacatcttttgatgcatgaaggcaagaagccacataaatgtgaagtttgcggGAAGAGCTTTAACCAAGCATCTAATTTGAGgcatcatcttttgattcatgagggcaaaaagccacataagtgtgaaatttgtgaaaagagtTTTATCCAAGCATCTACTTTGaggcaacatcttttgattcatgagggcaaaaagccacattag
- Protein Sequence
- MFTDPPSLKDHLLIHDSEKKYKCEFCEKGFTRASALKNHVLIHGGKTPPKCEVCGKSFTHSSYLRTHLMIHEGKKPHKCKVCGKSFTHASALRAHRLIHEDKKLHKCEICGKSFFQASYLRQHLLLHEGKKPHKCEVCEKSFIRPSYLRDHRLIHEGKKPHKCEICGKSFTQTSYLRDHRLIHEGKKPHKCEFCGKSFNRSSTLRAHRFIHEGKKPHKCEVCGKSFIQASYLRQHFMIHEGKKPHKCEVCGKSFIQAYNLRKHLMIHEGKKRHKCEVCGKSFIQASYLRQHLMIHEGKKPHKCQLCGKSFTQASTLREHLLIHEGKKPQKCEVCGKSFTHANTLRAHLLMHEGKKPHKCEVCGKSFNQASNLRHHLLIHEGKKPHKCEICEKSFIQASTLRQHLLIHEGKKPH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00995435;
- 90% Identity
- iTF_00995435;
- 80% Identity
- iTF_00995435;