Basic Information

Insect: Metallyticus violacea
Gene Symbol: -
Assembly: GCA_030762175.1
Location: CM060832.1:24893950-24900593[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.0024 1.8 10.5 0.1 21 46 27 52 13 59 0.77

2 17 1.4 1.1e+03 1.6 0.0 22 51 56 85 52 87 0.83

3 17 1.8 1.4e+03 1.3 0.1 22 49 84 111 69 115 0.84

4 17 2 1.5e+03 1.2 0.1 23 44 113 134 109 142 0.83

5 17 0.62 4.7e+02 2.8 0.1 22 51 140 169 134 171 0.84

6 17 5.1 3.9e+03 -0.1 0.0 23 48 169 194 166 198 0.81

7 17 0.2 1.6e+02 4.3 0.1 22 51 196 225 192 227 0.85

8 17 0.55 4.2e+02 3.0 0.0 22 52 224 254 221 255 0.84

9 17 0.86 6.6e+02 2.3 0.0 22 49 252 279 249 283 0.81

10 17 0.58 4.4e+02 2.9 0.0 22 51 280 309 276 311 0.83

11 17 0.087 66 5.5 0.1 22 51 308 337 305 339 0.84

12 17 0.002 1.5 10.8 0.0 22 52 336 366 332 368 0.87

13 17 4.5 3.5e+03 0.0 0.0 22 51 364 393 361 395 0.81

14 17 0.19 1.5e+02 4.4 0.0 22 51 392 421 387 423 0.85

15 17 0.48 3.7e+02 3.1 0.1 22 51 420 449 416 451 0.74

16 17 1.6 1.2e+03 1.5 0.0 22 45 448 471 445 477 0.87

17 17 1.6 1.2e+03 1.5 0.2 26 52 480 506 475 507 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.0024	1.8	10.5	0.1	21	46	27	52	13	59	0.77
2	17	1.4	1.1e+03	1.6	0.0	22	51	56	85	52	87	0.83
3	17	1.8	1.4e+03	1.3	0.1	22	49	84	111	69	115	0.84
4	17	2	1.5e+03	1.2	0.1	23	44	113	134	109	142	0.83
5	17	0.62	4.7e+02	2.8	0.1	22	51	140	169	134	171	0.84
6	17	5.1	3.9e+03	-0.1	0.0	23	48	169	194	166	198	0.81
7	17	0.2	1.6e+02	4.3	0.1	22	51	196	225	192	227	0.85
8	17	0.55	4.2e+02	3.0	0.0	22	52	224	254	221	255	0.84
9	17	0.86	6.6e+02	2.3	0.0	22	49	252	279	249	283	0.81
10	17	0.58	4.4e+02	2.9	0.0	22	51	280	309	276	311	0.83
11	17	0.087	66	5.5	0.1	22	51	308	337	305	339	0.84
12	17	0.002	1.5	10.8	0.0	22	52	336	366	332	368	0.87
13	17	4.5	3.5e+03	0.0	0.0	22	51	364	393	361	395	0.81
14	17	0.19	1.5e+02	4.4	0.0	22	51	392	421	387	423	0.85
15	17	0.48	3.7e+02	3.1	0.1	22	51	420	449	416	451	0.74
16	17	1.6	1.2e+03	1.5	0.0	22	45	448	471	445	477	0.87
17	17	1.6	1.2e+03	1.5	0.2	26	52	480	506	475	507	0.87

Sequence Information

Coding Sequence: ATGAGAAGTTATGAGCAGTGCCATATCTCCTTTCCCACTCCACCTTCGGAAACAGCTGCGTCGTCTTCCTGGTTCCCGggtaagaagccacataaatgtgaagtttgtgagaagagctttacccaaacatctaatttaaggaaacatcttttgactcatgagggtaagaagccacataaatgtaaagtatgtggaaagagctttactgAAAAATCTagtttaagggaacatcttttgattcatgagggtaagaagccacataaatgtgaagtttgtgggaaaagctttacccaTACATCTAGTTTAAgggtacatcttttgattcatgagggtaggaaaccgcataaatgtgaagtttgtgggaagagctttacccagacatctaGTTTAAGGGTACATcgtttgattcatgagggtaagaagccacatagatgtgaagtttgtgggaagactTTTACCCAGGCAATTCAATTAAAgagtcatcttttgattcatgagggtaagaaaccacataaatgtgaagtttgtgggaagaactttacctATACATCTAGTTTAAgggtacatcttttgattcatgagggtaagaagccacataaatgtgaggtTTGCGAGAAGAGTTTTACCCAGAAAGTtcatttaagggaacatcttttgattcatgagggtaagaagccacataaatgtgaagtttgtggtaagagcttcACCCGTACATCtgatttaagggaacatctttggatgcatgagggtaaaaagccacataaatgtgcagtttgtgggaagagctttacacgGACATCTGATTTAAGGGGACACCTTTTGTTCCATAatggtaagaagccacataaatgtgaagtttgtggaaagagctttacccggACATCtgatttaagggaacatcttttgattcatgagggtaagaagccgcataaatgtgaagtttgtgggaagagctttacacaTACATCTagtttaaggagacatcttttaattcatgagggtaagaaaccacataaatgtggagtgtgtgggaagagctttacccaaacCTCTAACTTAAGGAAACATCTtatgattcatgaaggtaagaaaccacataaatgtgaagtttgtggaaagagctatAGCGAAAAATCTAGTTTAAGGGGACATCTTTTcattcatgagggtaaaaagccacataaatgtgaagtttgtgggaaaagctttacccaAACTTCTAGTTTAAGactacatcttttgattcatgagggtaagaagccacataaatgtgaagtttgtgagaagagctttatcCGGACATCTGATTTAAGGAGTCATCtgttgattcatgagggtaaaaaaccacataaatgtgaagtttgtgggaagagctataCCCATTCATCTGGTTTAAgggtacatcttttgattcatgagggtaagatgTCACACaattgtgaagtttgtggtaagaaCTTTACCCAGAAATGTCATTTAAggaatcatcttttgattcatgagagtAACAAGCCACATGAATGA
Protein Sequence: MRSYEQCHISFPTPPSETAASSSWFPGKKPHKCEVCEKSFTQTSNLRKHLLTHEGKKPHKCKVCGKSFTEKSSLREHLLIHEGKKPHKCEVCGKSFTHTSSLRVHLLIHEGRKPHKCEVCGKSFTQTSSLRVHRLIHEGKKPHRCEVCGKTFTQAIQLKSHLLIHEGKKPHKCEVCGKNFTYTSSLRVHLLIHEGKKPHKCEVCEKSFTQKVHLREHLLIHEGKKPHKCEVCGKSFTRTSDLREHLWMHEGKKPHKCAVCGKSFTRTSDLRGHLLFHNGKKPHKCEVCGKSFTRTSDLREHLLIHEGKKPHKCEVCGKSFTHTSSLRRHLLIHEGKKPHKCGVCGKSFTQTSNLRKHLMIHEGKKPHKCEVCGKSYSEKSSLRGHLFIHEGKKPHKCEVCGKSFTQTSSLRLHLLIHEGKKPHKCEVCEKSFIRTSDLRSHLLIHEGKKPHKCEVCGKSYTHSSGLRVHLLIHEGKMSHNCEVCGKNFTQKCHLRNHLLIHESNKPHE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00995364;
90% Identity: iTF_00995364;
80% Identity: iTF_00995364;