Mvio016298.1
Basic Information
- Insect
- Metallyticus violacea
- Gene Symbol
- -
- Assembly
- GCA_030762175.1
- Location
- CM060834.1:8307971-8329219[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.7 1.3e+03 1.4 0.1 22 46 64 88 61 94 0.85 2 12 0.88 6.7e+02 2.3 0.1 22 45 92 115 88 123 0.83 3 12 7.1 5.5e+03 -0.6 0.1 22 52 148 178 145 180 0.81 4 12 2.2 1.7e+03 1.0 0.1 26 51 236 261 228 263 0.80 5 12 0.19 1.5e+02 4.4 0.1 22 46 260 284 257 291 0.88 6 12 1.5 1.2e+03 1.5 0.0 23 45 289 311 285 317 0.87 7 12 0.0022 1.7 10.6 0.2 23 51 317 345 313 347 0.84 8 12 0.13 1e+02 4.9 0.1 22 52 344 374 341 376 0.85 9 12 0.02 16 7.5 0.0 23 49 401 427 396 430 0.84 10 12 0.012 9 8.3 0.0 20 44 426 450 424 456 0.88 11 12 0.012 8.8 8.3 0.0 20 49 454 483 451 487 0.85 12 12 0.27 2.1e+02 3.9 0.1 22 44 484 506 481 510 0.89
Sequence Information
- Coding Sequence
- ATGGATTTCAATTTAGAGAATAAGGAAGAACCAATGGACTACGATACATACTTGCTTGAGTTGGAATCACCACCAGAAACTAAGGAGGAGACTTCTTTCAGTGTTGCTGATGATATTGATTTTAAGGATGAATTTGAGAACTTTGCATACCCAAGCAAGTTGAAGACCCATCTTCTGGTTCATGAGgctaaaaaaccacataaatgtgaagtgtgtgaaAAGAGCTTTACACATCCATATAATTTGAAGACTCATCTtctgattcatgagggtaaacgTCCCCATAAATGTCAAGTTTGTGGAAAAAATTTTACCAGGTCAGATAGTTTAAGGATTCATCTTTTGACACATGAGGGTaaaaaaccatataaatgtgaagtttgtgaaaagagcTTTATACATCCATATAAGTTGAAGACTCATCTTCTGATTCATGAGGCTaacaaaccacataaatgtgaagtgtgtgaaAAGAGCTTTACACATCCATATAAGTTGAAGACTCATCTTCTTATTCATGAGGGTaacaaaccacataaatgtgaagtttgtgaaaagagcTTTACTTACCCATATAAGTTGAAGACTCATCTTCTAATTCATGAGGATAATAAACCacacaaatgtgaagtgtgtcaaAAGAGCTTTGGAAACCCATATAAGTTGAAAACTCATCTTCTTATTCATAAGGGcaacaaatcacataaatgtgaagtgtgtgaaAAGAGCTTTACACATCCATATAATTTAAGGATTCATCTtctgatgcatgagggtaagaaaccacataaatgtgaagtgtgtgaaAAGAGCTTTAGACATCTATATAATTTGAAGACTCATCttatgattcatgagggtaaaagtccacataaatgtaaagtttgtggaaagaactttacCAGGTCAGATAGTTTAAGgattcatcttttgattcatgaggataaaagtccacataaatgtaaagtttgtggaaagaactttaGCAGGTCACGCAATTTAAGggctcatcttttgattcatgagggtaagaaaccacataaatgtgaaatttgtgacaAGAGCTTTACATACTCATGTACTTtgaggactcatcttttgattcatgaggggaagaaaccacataaatgtgaagtttgtggcaaaAATTTTACTCGTATATATGATTTGAGGACTCAtcatttgattcatgagggtaggaaaccacataaatgcgaagtttgtggaaagaactttaGTCAATCAAGTAATTTAAAGgttcatcttttgattcatcagggtaagaaaccacataaatgtgaaatttgtggtatGAACTTTAGTCAGTCAAGTAATTTAAAGACTCATCATTTAATTCATCagggtaaaaaaccacataaatgtgaaatttgtggaaagagctttagaTATTCATATAATTTGACGACTCATATtctgattcatgagggtaagaaaccacataaatgtgaagtgtgtgaaAAGAACTTTACCCAGGCAACTCACTTAAGAAAGCATATTCTAATTCATGGGGGTAGGAAACTGCATTAA
- Protein Sequence
- MDFNLENKEEPMDYDTYLLELESPPETKEETSFSVADDIDFKDEFENFAYPSKLKTHLLVHEAKKPHKCEVCEKSFTHPYNLKTHLLIHEGKRPHKCQVCGKNFTRSDSLRIHLLTHEGKKPYKCEVCEKSFIHPYKLKTHLLIHEANKPHKCEVCEKSFTHPYKLKTHLLIHEGNKPHKCEVCEKSFTYPYKLKTHLLIHEDNKPHKCEVCQKSFGNPYKLKTHLLIHKGNKSHKCEVCEKSFTHPYNLRIHLLMHEGKKPHKCEVCEKSFRHLYNLKTHLMIHEGKSPHKCKVCGKNFTRSDSLRIHLLIHEDKSPHKCKVCGKNFSRSRNLRAHLLIHEGKKPHKCEICDKSFTYSCTLRTHLLIHEGKKPHKCEVCGKNFTRIYDLRTHHLIHEGRKPHKCEVCGKNFSQSSNLKVHLLIHQGKKPHKCEICGMNFSQSSNLKTHHLIHQGKKPHKCEICGKSFRYSYNLTTHILIHEGKKPHKCEVCEKNFTQATHLRKHILIHGGRKLH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00995433;
- 90% Identity
- iTF_00995433;
- 80% Identity
- iTF_00995433;