Mvio005574.1
Basic Information
- Insect
- Metallyticus violacea
- Gene Symbol
- -
- Assembly
- GCA_030762175.1
- Location
- CM060831.1:93023478-93024836[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.62 4.7e+02 2.8 0.0 23 48 57 82 53 86 0.84 2 12 0.038 29 6.7 0.0 22 51 84 113 80 115 0.85 3 12 1.7 1.3e+03 1.4 0.1 23 46 113 136 109 142 0.84 4 12 0.18 1.4e+02 4.5 0.1 22 45 140 163 137 175 0.88 5 12 7 5.4e+03 -0.6 0.0 26 51 172 197 166 199 0.77 6 12 0.092 70 5.4 0.2 22 52 196 226 191 228 0.86 7 12 0.19 1.5e+02 4.4 0.1 21 50 251 280 243 282 0.86 8 12 0.046 35 6.4 0.1 22 51 280 309 275 311 0.83 9 12 4.7 3.6e+03 -0.0 0.0 22 46 308 332 304 338 0.82 10 12 0.0055 4.2 9.3 0.1 26 46 340 360 333 371 0.86 11 12 0.0012 0.95 11.4 0.1 23 46 393 416 388 423 0.87 12 12 3.1 2.4e+03 0.5 0.1 26 48 424 445 420 449 0.79
Sequence Information
- Coding Sequence
- ATGGCACATAAATGTGACGCGtttgggaagagctttactcagacatcTACTTCAAAGATCCATTTTTTGATGAATGAGGGTGAGataccacataaatgtgaagattTTGGGGAAAGCTTTACTCAGGCATCTCATTTAAGTAATcaccttttgattcatgaaggtaggAAGCCacttaaatgtgaagtttgtgaaaagGGATTTACCCAGACGCTTCATTTAAGGGTTcaccttttgattcatgagggtaagaagccacattcatgtgaaatttgtgggaaaagttTTACTGGAGCATCTAATTTAAGaagtcatcttttgattcatgagggtaggaaaccacataaatgtgaagtttgcggAAAGTGCTTTACCCTGACATCttatttaaggaaacatcttttgatgcatgagggtaagagaccacataaatgtgaagtttgtgaaaaaagctttacccagacatctcatttaagggaacaccttttgattcatgagggtaagaatacacataaatgtaaagtttgtgggaaaagctttacacTGACATCTTACTTAAGAAAACATCTATTGATGcacgagggtaagaagccacataaatgtgaagtttgtggtaagagcttAACCTGTTCATCTACTTTAaggcaacatcttttgattcatgagggtaagaaaccacatatatGTGAAGTTTGCGGGAAGGGCTTTACCCTAAGAACTACTTTAAAGAGACATGTTatgatacataagggtgagatgccacataaatgtgaaatttgtgggaagtgCTTTACTTGGGCATCTGCTTTAAGCAGACACCTTTTAATGCAtaagggtaagaagccacataaatgtgaagtttgtgggaagagttttacccggacatctactttaaggaggcatcttttgatgcatgagggtaagaagccacataaatgtgagctttgtgagaagagctttactcgGATATCTACtttaaggacacatcttttgattcataagggtaagaaagcacataaatgtgaagtttgtgggaagagctttacccaaacATCTAATTTAAgaagacatcttttgatgcatgagggtaagaaactacataaatgtgaagtttgtggaaagagctttacccagtTATCTTATTTAAgggaacatattttgattcatgggggtaagaaaccacataaatgtgaagtttgtggaaagaactttacTCAGACATCAAATTTAAGAAGACATCTTTTAATGCATGAGGGCAAAAaggcacataaatgtgaagtttgtgggaagagctttacccggacatctactttaaggaaacatcttttgatgcatgtgGGTAAGAAGCTACATAATTGA
- Protein Sequence
- MAHKCDAFGKSFTQTSTSKIHFLMNEGEIPHKCEDFGESFTQASHLSNHLLIHEGRKPLKCEVCEKGFTQTLHLRVHLLIHEGKKPHSCEICGKSFTGASNLRSHLLIHEGRKPHKCEVCGKCFTLTSYLRKHLLMHEGKRPHKCEVCEKSFTQTSHLREHLLIHEGKNTHKCKVCGKSFTLTSYLRKHLLMHEGKKPHKCEVCGKSLTCSSTLRQHLLIHEGKKPHICEVCGKGFTLRTTLKRHVMIHKGEMPHKCEICGKCFTWASALSRHLLMHKGKKPHKCEVCGKSFTRTSTLRRHLLMHEGKKPHKCELCEKSFTRISTLRTHLLIHKGKKAHKCEVCGKSFTQTSNLRRHLLMHEGKKLHKCEVCGKSFTQLSYLREHILIHGGKKPHKCEVCGKNFTQTSNLRRHLLMHEGKKAHKCEVCGKSFTRTSTLRKHLLMHVGKKLHN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00995459;
- 90% Identity
- iTF_00995459;
- 80% Identity
- iTF_00995459;