Basic Information

Insect: Metallyticus violacea
Gene Symbol: -
Assembly: GCA_030762175.1
Location: CM060837.1:17704295-17719024[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 6.1 4.7e+03 -0.4 0.0 23 52 31 60 28 61 0.82

2 16 0.15 1.1e+02 4.8 0.1 22 44 58 80 55 84 0.91

3 16 0.076 58 5.7 0.1 22 45 86 109 82 116 0.87

4 16 2.1 1.6e+03 1.1 0.0 26 51 118 143 112 145 0.84

5 16 2.7 2e+03 0.8 0.0 22 45 142 165 138 173 0.82

6 16 3.2 2.5e+03 0.5 0.1 23 48 171 196 167 200 0.79

7 16 0.11 81 5.2 0.1 22 52 198 228 185 229 0.86

8 16 0.0081 6.2 8.8 0.0 22 51 226 255 222 258 0.85

9 16 5.4 4.1e+03 -0.2 0.0 22 46 254 278 251 285 0.85

10 16 1.6 1.2e+03 1.5 0.0 23 46 283 306 277 311 0.87

11 16 0.053 40 6.2 0.0 22 52 338 368 334 370 0.85

12 16 6.8 5.2e+03 -0.5 0.0 23 51 367 395 364 397 0.81

13 16 0.38 2.9e+02 3.5 0.0 22 51 394 423 390 425 0.84

14 16 0.74 5.7e+02 2.5 0.0 22 52 422 452 419 454 0.86

15 16 4.5 3.5e+03 0.0 0.0 22 51 450 479 447 482 0.82

16 16 0.048 36 6.4 0.0 20 52 504 536 493 538 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	6.1	4.7e+03	-0.4	0.0	23	52	31	60	28	61	0.82
2	16	0.15	1.1e+02	4.8	0.1	22	44	58	80	55	84	0.91
3	16	0.076	58	5.7	0.1	22	45	86	109	82	116	0.87
4	16	2.1	1.6e+03	1.1	0.0	26	51	118	143	112	145	0.84
5	16	2.7	2e+03	0.8	0.0	22	45	142	165	138	173	0.82
6	16	3.2	2.5e+03	0.5	0.1	23	48	171	196	167	200	0.79
7	16	0.11	81	5.2	0.1	22	52	198	228	185	229	0.86
8	16	0.0081	6.2	8.8	0.0	22	51	226	255	222	258	0.85
9	16	5.4	4.1e+03	-0.2	0.0	22	46	254	278	251	285	0.85
10	16	1.6	1.2e+03	1.5	0.0	23	46	283	306	277	311	0.87
11	16	0.053	40	6.2	0.0	22	52	338	368	334	370	0.85
12	16	6.8	5.2e+03	-0.5	0.0	23	51	367	395	364	397	0.81
13	16	0.38	2.9e+02	3.5	0.0	22	51	394	423	390	425	0.84
14	16	0.74	5.7e+02	2.5	0.0	22	52	422	452	419	454	0.86
15	16	4.5	3.5e+03	0.0	0.0	22	51	450	479	447	482	0.82
16	16	0.048	36	6.4	0.0	20	52	504	536	493	538	0.88

Sequence Information

Coding Sequence: ATGTCTGACTGCAAATCTGCCGAAATGAGTACCCTGGAGATAATCTTTTTACAGAAGTATCCgtcacatcttttgatacatgagggtaaaAAGCCATATctgtgtgaagtttgtgggaggAGCTTTACCACATTATCTACTTTGCGGACACATCTTTTGTTGCACGAGGGTAAGAAAccgcataaatgtgaagtttgtggtaagtgCTTTACCCAGACATCTACGTTACGGAAACATCTTTTGACctatgagggtaagaaaccacataaatgtgaagtttgcggAAAGAGTATTATCCAAACATCTACTTTAAgggcacatcttttgattcacgaaGGTAAAAAACTGcttaaatgtgaagtttgtggaaagaactttacTCAGACAGCTACTTTACGGACACATCTTTTAATGCACGAGGgcaagaaaccatataaatgtgaagtttgtgggaagagctttactcagacatATGGTTTAAGGACACATCATTTGATtcacgagggtaagaaaccacataaatgtgaagcttGTGGGAAGTGCTTTACCCGGACATCTCAATTAAGGTCACATCTTTTGATGCACgagggtaaaaaaccacatagatgtgaagtttgtgggaagagcttcaCCTGGACATctaatttaaggaaacatcttttcaTGCAcgaaggtaagaaaccacataattgtgcagtttgtgggaagaactttatcCAGTCATCggatttaaggaaacatcttttgatgcacgagggtaagaaaccatataaatgtgcagtttgtgggaagagctttaccacAGCATCCTATTTAAGGAAACATGTCATGATTCACGAGGGTAAggaaccacataaatgtgaagtctgCGAGAAGAGCTTTTCCACAGCATCttatttaaggaaacatcttatgatgcacgagggtaagaaactacatgaatgtgaagtttgtgggaagaactttaccaCAACATCCGATTTAACGAAACATCTGATGATtcacgagggtaagaaaccacataattgtgaagtttgtgggaagagctttaccatGACGTctaatttaaggaaacatcttttgatgcacgagggtaagaaaccacataaatgtgaagtttgtgggaagagctttaccacGGCAGGTTAtgtaaggaaacatcttttgatccacgagggcaagaaaccacataaatgtaaagtttgtgggaagagctttacccacaCTTCagatttaaggaaacatcttttgatccacgagggcaagaaaccacataaatgtgaagtttgtgggaagagctttaccacggcatcttatttaaggaaacatcttaTGATTCAcgagggcaagaaaccacataaatgtgaagtttgtgggaagaactttacctggacatctactttaaggacacatcttttgatgcacgaggataagaagccacataaatgtgaagtttgtggtaagacCTTTACCTGGACATCTACTTTCaggacacatcttttgatgcaccagGGTAAGAAAccgcataaatgtgaagtttgtgggaagagctttacccaggcatcCACTTTAAGGatgcatcttttgattcacgagggtaagaaaccacataaatgtgaagtttgtgggaagagctttaagCGGACATCTCATTTAAGCTCACATCTTTTAATGCACGAGGGCACTCCAAGGGCAGGAGTATTCTTAGCAACAGACAAAGCAGAAGTATTTGCAGACATGCTCGAGTATCGCTTTAAAGAAAATCCAAGCAACAATCAAGTGCATGAACATGAGATTGAGACATGGTTTCTAGCTTGGGAAGCCAACGAGCCAAAACAAAAACTACCTCTGTTTACTACCCAGGAAGTcttccagcaattaaaaatgctaaaactgGGCAAAGCCGCTGACCCAGACGGAGTGCGCAATAAAGACTTGAGCAACATGCCTCGGAAGGCACTAGTTCAGACACAAAAATATTCAACGCTTCATAAAGCACCACAACTTCCCTGCTGGAAGTAG
Protein Sequence: MSDCKSAEMSTLEIIFLQKYPSHLLIHEGKKPYLCEVCGRSFTTLSTLRTHLLLHEGKKPHKCEVCGKCFTQTSTLRKHLLTYEGKKPHKCEVCGKSIIQTSTLRAHLLIHEGKKLLKCEVCGKNFTQTATLRTHLLMHEGKKPYKCEVCGKSFTQTYGLRTHHLIHEGKKPHKCEACGKCFTRTSQLRSHLLMHEGKKPHRCEVCGKSFTWTSNLRKHLFMHEGKKPHNCAVCGKNFIQSSDLRKHLLMHEGKKPYKCAVCGKSFTTASYLRKHVMIHEGKEPHKCEVCEKSFSTASYLRKHLMMHEGKKLHECEVCGKNFTTTSDLTKHLMIHEGKKPHNCEVCGKSFTMTSNLRKHLLMHEGKKPHKCEVCGKSFTTAGYVRKHLLIHEGKKPHKCKVCGKSFTHTSDLRKHLLIHEGKKPHKCEVCGKSFTTASYLRKHLMIHEGKKPHKCEVCGKNFTWTSTLRTHLLMHEDKKPHKCEVCGKTFTWTSTFRTHLLMHQGKKPHKCEVCGKSFTQASTLRMHLLIHEGKKPHKCEVCGKSFKRTSHLSSHLLMHEGTPRAGVFLATDKAEVFADMLEYRFKENPSNNQVHEHEIETWFLAWEANEPKQKLPLFTTQEVFQQLKMLKLGKAADPDGVRNKDLSNMPRKALVQTQKYSTLHKAPQLPCWK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00995414;
90% Identity: iTF_00995414;
80% Identity: iTF_00995414;