Mvio000633.1
Basic Information
- Insect
- Metallyticus violacea
- Gene Symbol
- -
- Assembly
- GCA_030762175.1
- Location
- CM060830.1:17433838-17435707[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.89 6.8e+02 2.3 0.0 22 48 120 146 117 150 0.82 2 9 0.01 7.7 8.5 0.0 22 46 148 172 145 179 0.87 3 9 0.5 3.8e+02 3.1 0.0 26 52 180 206 173 208 0.83 4 9 0.76 5.8e+02 2.5 0.0 22 51 204 233 201 235 0.83 5 9 1.3 9.8e+02 1.8 0.0 22 51 232 261 229 263 0.83 6 9 0.014 11 8.1 0.0 22 52 260 290 257 292 0.85 7 9 0.43 3.3e+02 3.3 0.0 22 51 288 317 284 319 0.83 8 9 0.38 2.9e+02 3.5 0.1 22 45 316 339 313 346 0.87 9 9 0.21 1.6e+02 4.3 0.0 27 46 349 368 343 372 0.88
Sequence Information
- Coding Sequence
- ATGTCCAGAAGAAATGGCACAGAGTCTGGCATCGGAGAGGGAGGAGTTGAAGTACGGGATATGGTGACAGCTGTACAATGGCAGGAGGTATGGTATCATTGGACACATCATGAGAAACAGGCATGGTGCAAAGGCAGTGAAATGGGAGGTGAGGAAACAAGGAAGAGGATGACAGCTGTAATGCCAAGAGGCAGGCCATTGACGTTAGGAGAAGACATAGTGTCTATGTTACAAAGCCCTGATGTAGGAATAGCAGCAAGGAAAATTACATACCGGGAGACCCAGAAAACAAAGGGATGGAGGAAGAATTTTACTCAGACAGGTCATatgaggaaacatcttttgattcatgagggcaagaaaccatataaatgtgaagtttgtggcaagagcATTATTCACACTAGTGATAtgaagaaacatcttttgattcatgaaggtaaaaaaccccataaatgtgaagtttgtggtaagagctttactCAGGCAAGCAATTTgaggacacatcttttgattcatgatggTAAGAAGTCGCATAAGTGTAAGGTTTGTGATAAGAGCTTTACTCAAGCAGGCAGTCTgaggacacatcttttgattcatgaaggcaaaaaaccccataaatgtgaagtatgtggtAAGAGTTTTACTGAGGTAGGTAGTCTgagaaaacatcttttgattcatgaaggcaagaaaccatataagtgtgaagtttgtggcaagagctttacTCACACAGATAATATGAAGAaccatcttttgattcatgagggcaagaaaccccataagtgtgaagtttgtggcaagagctttaTTCAGGCAGGTAATatgaggaaacatcttttgattcatgaaggcaagaaaccacataaatgtgaagtatgcGGCAAGAGCTTTACTTACATAGGTAATatgaggaaacatcttttgattcatgaaggcaaaaaaccccataaatgtgaagtatgtgcTAAGAGCTTTACTCATGCTAGTACACTGAggaaacatcttttaattcacgAAGGCAAGAAGCTTTTTATGTGTGAACtttgtgggaaaagatttacCCAATCATCTAATCTAATGAAACATCTTTCAATTCATCAGAGCAAAATTCTAGTGTAA
- Protein Sequence
- MSRRNGTESGIGEGGVEVRDMVTAVQWQEVWYHWTHHEKQAWCKGSEMGGEETRKRMTAVMPRGRPLTLGEDIVSMLQSPDVGIAARKITYRETQKTKGWRKNFTQTGHMRKHLLIHEGKKPYKCEVCGKSIIHTSDMKKHLLIHEGKKPHKCEVCGKSFTQASNLRTHLLIHDGKKSHKCKVCDKSFTQAGSLRTHLLIHEGKKPHKCEVCGKSFTEVGSLRKHLLIHEGKKPYKCEVCGKSFTHTDNMKNHLLIHEGKKPHKCEVCGKSFIQAGNMRKHLLIHEGKKPHKCEVCGKSFTYIGNMRKHLLIHEGKKPHKCEVCAKSFTHASTLRKHLLIHEGKKLFMCELCGKRFTQSSNLMKHLSIHQSKILV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00995538;
- 90% Identity
- iTF_00995538;
- 80% Identity
- iTF_00995538;