Basic Information

Insect: Metallyticus violacea
Gene Symbol: -
Assembly: GCA_030762175.1
Location: CM060830.1:5289672-5306616[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.39 3e+02 3.4 0.0 19 46 151 178 146 184 0.86

2 12 8.3 6.4e+03 -0.8 0.0 23 51 239 267 236 269 0.82

3 12 0.096 74 5.4 0.1 22 50 266 294 262 297 0.84

4 12 0.32 2.4e+02 3.7 0.1 22 52 294 324 291 326 0.85

5 12 2.4 1.9e+03 0.9 0.0 22 51 322 351 319 354 0.84

6 12 0.0081 6.2 8.8 0.1 23 52 379 408 374 410 0.86

7 12 1.5 1.1e+03 1.6 0.0 22 51 406 435 403 437 0.84

8 12 1.1 8.4e+02 2.0 0.1 22 47 434 459 430 464 0.83

9 12 0.041 31 6.6 0.1 22 52 462 492 458 494 0.86

10 12 0.16 1.3e+02 4.6 0.0 20 51 488 519 486 522 0.86

11 12 0.023 17 7.4 0.2 22 49 518 545 515 549 0.83

12 12 0.071 55 5.8 0.0 23 45 575 597 571 603 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.39	3e+02	3.4	0.0	19	46	151	178	146	184	0.86
2	12	8.3	6.4e+03	-0.8	0.0	23	51	239	267	236	269	0.82
3	12	0.096	74	5.4	0.1	22	50	266	294	262	297	0.84
4	12	0.32	2.4e+02	3.7	0.1	22	52	294	324	291	326	0.85
5	12	2.4	1.9e+03	0.9	0.0	22	51	322	351	319	354	0.84
6	12	0.0081	6.2	8.8	0.1	23	52	379	408	374	410	0.86
7	12	1.5	1.1e+03	1.6	0.0	22	51	406	435	403	437	0.84
8	12	1.1	8.4e+02	2.0	0.1	22	47	434	459	430	464	0.83
9	12	0.041	31	6.6	0.1	22	52	462	492	458	494	0.86
10	12	0.16	1.3e+02	4.6	0.0	20	51	488	519	486	522	0.86
11	12	0.023	17	7.4	0.2	22	49	518	545	515	549	0.83
12	12	0.071	55	5.8	0.0	23	45	575	597	571	603	0.88

Sequence Information

Coding Sequence: ATGGGTATCAAACTAGAGGTTAAGGAAGAACTGCTGGACCCTGTTGAAGATGCAGACAATTTCATATTGAAACCTGTACAGGAAAATTCATACAGAACTGTTAATGGCACCATATTGGAAACTGAGGTAAAGTCTGAGAGAATGATAAATGAATGCAGTGACTATGAGAAGATGGATCACAAATTAGAGTTCAAAACAGAATTGCTGGACCCCAAAAAAGATCCACTTGAGCTCAAATTCAAAATTGTAGAAGAGATTGCAAATAATGACAAACAGGATACTTTGTTTAAGAAAGAGATAAAGGAGCAGAAAGAGCCTGACATGGCTTTAATGAAGGAGGAAATCACAATTGAGGAATCAGACTTATCATACAGTGATCCAGGGGCTCACTTGGGAGACCTACCAATTTATGTGGATAATTCATCTACTACTTTTGTTGAAAGTAAAGACAGCAAAAAGAAGCAGGAATTTAAGTGTATAATTTGTGAAAGCATTTTCATAGACACTTCATCTTTGAGAgatcatttattaattcatgactctgaaaaaaaatataaatgcaaattgtgTGAAAAAAGTTTTACTAAGGCATCAGTCTTGATAAACCATATTTTGGATCATGAGAATAAGAAACATCATGAAAGTGAAATTTGTGCAAAGAACTTTAACCTTGCATCTTTATTGAGGGAGCATAGTTTTATTCATGATGGCAAGAAACCACATATGTGTCAACTTTGTGGAAAGAGTTATAGCCAAGTATCTGGCTTGAAggtacatcttttgattcatgaaggcaagaaaccacataagtgtgaagtttgtggaaagagttttacccatgcaaataatttcaggagacatattttgattcatgagggcaagaagccacataaatgtgaagtttgtggaaagagtttcaCTCAAGTTTCTACTTTGAgggcacatcttttgattcatgagggcaagaaacctcATAAGTGTGAAGTatgtggaaagagttttaatCAAGTATATGGTTTGAAGGCACATCTTTTGTTTCATAaaggcaagaaaccacataagtgtgaagcttgtggaaagagttttacgtATGCATATGATTTGAgggaacatattttgattcatgagggcaggAAGCCATATAAGTGTCaactttgtggaaagagttttacccaAGCACATAATTTGaggcaacatcttttgattcatgagggcaagaagcctcATATGTGTGAAGTATGTGGAAAGTGTTTTAGCCAAGTATCTGGTTTGAaggcacatcttttgattcatgaaggtaagaaaccacataagtgtgaaacctgtggaaagagttttacccaTGCATATAATTTGAGgcaacatattttgattcatgagggcaagaagccacataaatgtgaagtttgtggaaagtgTTTTACCCAAGCATCTACTTTGaggcaacatcttttgattcatcagggcaagaaaccacataagtgtgaagtttgtggaaagagctttaacCAATTGTCTGCTTTGAgggcacatcttttgattcatgaaggcaagaaaccatataaatgtgaagtttgtgaaaagagTTTTACCCATGCAAATAATTTGAGGAggcatattttgattcatgaggacaaaaagccacataagtgtgaacgTTGTGGAAAGAGCTTTGACCGAGCATCTTACTTGAGGGATCAtcatttgattcatgagggtaaggagccacataagtgtgatgtttgtgggaagagttttactcAAGCATCTAATATGAgaacacatcttttgattcatgagggcaaaacaTCCTATAAGTGTGaactttgtggaaagagttttaccaTAGCATCTTATTTGAGGAAGCATAAGTTGATTCATAAGGAAAAGAAGCCACATAAGCGAAGCTAA
Protein Sequence: MGIKLEVKEELLDPVEDADNFILKPVQENSYRTVNGTILETEVKSERMINECSDYEKMDHKLEFKTELLDPKKDPLELKFKIVEEIANNDKQDTLFKKEIKEQKEPDMALMKEEITIEESDLSYSDPGAHLGDLPIYVDNSSTTFVESKDSKKKQEFKCIICESIFIDTSSLRDHLLIHDSEKKYKCKLCEKSFTKASVLINHILDHENKKHHESEICAKNFNLASLLREHSFIHDGKKPHMCQLCGKSYSQVSGLKVHLLIHEGKKPHKCEVCGKSFTHANNFRRHILIHEGKKPHKCEVCGKSFTQVSTLRAHLLIHEGKKPHKCEVCGKSFNQVYGLKAHLLFHKGKKPHKCEACGKSFTYAYDLREHILIHEGRKPYKCQLCGKSFTQAHNLRQHLLIHEGKKPHMCEVCGKCFSQVSGLKAHLLIHEGKKPHKCETCGKSFTHAYNLRQHILIHEGKKPHKCEVCGKCFTQASTLRQHLLIHQGKKPHKCEVCGKSFNQLSALRAHLLIHEGKKPYKCEVCEKSFTHANNLRRHILIHEDKKPHKCERCGKSFDRASYLRDHHLIHEGKEPHKCDVCGKSFTQASNMRTHLLIHEGKTSYKCELCGKSFTIASYLRKHKLIHKEKKPHKRS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00995432;
90% Identity: iTF_00995432;
80% Identity: iTF_00995432;