Mvio024831.1
Basic Information
- Insect
- Metallyticus violacea
- Gene Symbol
- -
- Assembly
- GCA_030762175.1
- Location
- CM060837.1:3231762-3232859[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.12 91 5.1 0.1 20 48 3 31 2 36 0.83 2 12 0.011 8.3 8.4 0.2 22 44 33 55 30 64 0.88 3 12 3.1 2.4e+03 0.6 0.0 24 45 63 84 59 90 0.84 4 12 4 3.1e+03 0.2 0.2 26 46 92 112 86 120 0.76 5 12 5.4 4.2e+03 -0.2 0.1 22 45 116 139 113 147 0.79 6 12 0.62 4.8e+02 2.8 0.0 22 51 144 173 136 175 0.83 7 12 0.043 33 6.5 0.1 22 51 172 201 168 203 0.85 8 12 0.068 52 5.9 0.0 22 52 200 230 197 232 0.85 9 12 1.4 1.1e+03 1.6 0.0 22 47 228 253 225 258 0.83 10 12 0.0047 3.6 9.6 0.2 22 49 256 283 253 287 0.84 11 12 0.077 59 5.7 0.0 22 52 284 314 281 316 0.85 12 12 0.14 1.1e+02 4.9 0.0 26 44 344 362 337 365 0.86
Sequence Information
- Coding Sequence
- atGCCTCAAGTCAACAAACCATATAAATGCGAAGTATGTGGGAAGAGGTTTAGCCGAGCTTCTAATTTAAgagaacatattttgattcatggtaataagaaaccacataaatgtaatatttgtgggAAGCGGTTTAGAAGAACATCTAATTTAAGGGAACATATTTTGGTTCATGGTGGTAAGGTACCagataaatgtgaagtttgtggtgaaAGCTTCACTCTTACATCTAGCTTGAAGAGACACCTTTTGATTCATCGGGATAAgaaacataaatgtgaagtttgtgggaagaggtTTTCTAGGACATCTAATTTAAGGGAACATCACTTGATTCATGAGggaaagaaaccacataaatgtgaagtttgtggggaGAGCTTTACTCTTGCTTCTAGCTTGAAGAGGCACcgtttgattcatgaaggtaagaagccacataaatgtgaagtttgtggtgagAGCTTTACCAATTCATCCACATTGAAGAGCCATCTgctgattcatgagggtaagaaaccacataaatgtaaggTTTGTGGGAAGTGCTTTACCCAGTCATCCACATTGAAGAgccatcttttgattcatgagggtaagaaaccacataaatgtgaggtttgtgggaaaagctttacccaGTCATCTACATTGAAgagtcatcttttgattcatgagggtaagaaaccacataaatgtgaagtttgtggggaGAGCTTTACAAGTTCATCTACCTTGAAGAGCCATCTTTTGGtccatgagggtaagaaacctcataaatgtgaagtttgtaggAAGAGTTTTACTCAGCTATCTAACTTAAGGagacatttttttattcatgagggtaagaaaccacataaatgtgaggtttgtgggaagagctttgctCAGTCATCTACTTTAAAgagtcatcttttgattcatgagggtaagaaaccacataaatgtaaggtttgtgggaagagctttacccattTATCTACCTTGAAGAGccatcttttgattcacgagggcaagaaatcacataaatgtgaagtttgtgggaagagctttattcAGGTATCTAACTtaaagagacatcttttgattcattaG
- Protein Sequence
- MPQVNKPYKCEVCGKRFSRASNLREHILIHGNKKPHKCNICGKRFRRTSNLREHILVHGGKVPDKCEVCGESFTLTSSLKRHLLIHRDKKHKCEVCGKRFSRTSNLREHHLIHEGKKPHKCEVCGESFTLASSLKRHRLIHEGKKPHKCEVCGESFTNSSTLKSHLLIHEGKKPHKCKVCGKCFTQSSTLKSHLLIHEGKKPHKCEVCGKSFTQSSTLKSHLLIHEGKKPHKCEVCGESFTSSSTLKSHLLVHEGKKPHKCEVCRKSFTQLSNLRRHFFIHEGKKPHKCEVCGKSFAQSSTLKSHLLIHEGKKPHKCKVCGKSFTHLSTLKSHLLIHEGKKSHKCEVCGKSFIQVSNLKRHLLIH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00995445; iTF_00995360;
- 90% Identity
- iTF_00995445; iTF_00995360;
- 80% Identity
- iTF_00995445; iTF_00995360;