Mvio001050.1
Basic Information
- Insect
- Metallyticus violacea
- Gene Symbol
- -
- Assembly
- GCA_030762175.1
- Location
- CM060830.1:30690584-30706699[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 2.5 1.9e+03 0.8 0.0 26 46 87 106 82 113 0.80 2 10 0.0016 1.2 11.1 0.1 22 51 111 140 106 142 0.85 3 10 0.026 20 7.2 0.1 22 51 139 168 136 170 0.84 4 10 0.0095 7.3 8.6 0.3 22 44 167 189 164 198 0.87 5 10 0.086 66 5.5 0.1 26 52 199 225 191 227 0.85 6 10 1.4 1e+03 1.7 0.0 22 47 223 248 219 253 0.82 7 10 0.14 1.1e+02 4.9 0.1 22 49 251 278 248 282 0.84 8 10 0.1 79 5.3 0.0 22 45 279 302 275 308 0.88 9 10 0.2 1.5e+02 4.4 0.0 23 51 308 336 303 339 0.84 10 10 0.28 2.1e+02 3.9 0.1 22 45 335 358 332 365 0.76
Sequence Information
- Coding Sequence
- ATGGATGTGAAAGTAGAAATTAAGGAAGAAGTACCAGACCATGATGTGAATTCACTTGATTGGAAACCAGAAATTAAAGAGGAAAATTCTTGCAATGCTGCTCATTacattgtaatggaaaattcttgTAATGCTGTTCATTACACTGTGGTGGAAAATGAAAAGGAGCAGGAGCTTGATGTAGCTGTAATGAAGGATGAAATCACAGTTGAGGAATTAAATTATTCGTACAGTTATCCAGGGATCAAGAAGTCGCCTgtgtgtgaagtttgtgggaagagctttaccaagATATCTAATTTGAGGATACATCTTCTAaatcatgagggcaagaagccacatgcATGCAAAATATGTGGAGTAGGCTTTATCCAGGCATCTAAATTGAGGcgacatcttttaattcatgatggCAAAAAgccccataaatgtgaagtttgtgggaagagttttacccGAGCATCTAACTTAAGacaacatcttttaattcatgagggcaagaagccacataagtgtgcaATTTGTGAGTTGAGCTTTATCCAGGCATCTTATTTGAGGCGACATCTTTTAAGTCATGAGGGCAAGAAGATAAATAAGTGCAGTGTGTGTGACAAGAGTTTTACTCAGGCACAAACTTTGAGGCAACATCTTctaattcatgagggcaagaagccacataagtgtgaagtttgtgggctGGGCTTTACCTATGCCTTTAATTTAAGGagtcatattttaattcatgatggcaaaaagccacataagtgtgaagtttgtgggaagtgTTTTACTCTTTcatcttatttgagaaaacatcttcttgttcatgagggcaagaaaccctataaatgtgaactttgtgggaagagctttactcagtcATCTTATTTGAGGGCTCATCTTCTTATTCATGAGGGCAAAGcgcctcataaatgtgaagtttgtggaaagagctttacacGAGCATCCAATTTAAAgcaacatcttttaattcatgagggaaagaagccatataagtgtgaagtttgtgggtaCAGCTTTATCCAGGCTTCTAAATTGAGGCAACATATGTTAATTCATGAGGACAGAAGGCCCCATTAA
- Protein Sequence
- MDVKVEIKEEVPDHDVNSLDWKPEIKEENSCNAAHYIVMENSCNAVHYTVVENEKEQELDVAVMKDEITVEELNYSYSYPGIKKSPVCEVCGKSFTKISNLRIHLLNHEGKKPHACKICGVGFIQASKLRRHLLIHDGKKPHKCEVCGKSFTRASNLRQHLLIHEGKKPHKCAICELSFIQASYLRRHLLSHEGKKINKCSVCDKSFTQAQTLRQHLLIHEGKKPHKCEVCGLGFTYAFNLRSHILIHDGKKPHKCEVCGKCFTLSSYLRKHLLVHEGKKPYKCELCGKSFTQSSYLRAHLLIHEGKAPHKCEVCGKSFTRASNLKQHLLIHEGKKPYKCEVCGYSFIQASKLRQHMLIHEDRRPH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00995491;
- 90% Identity
- iTF_00995491;
- 80% Identity
- iTF_00995491;