Mvio010578.1
Basic Information
- Insect
- Metallyticus violacea
- Gene Symbol
- -
- Assembly
- GCA_030762175.1
- Location
- CM060832.1:101173885-101175078[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.1 76 5.3 0.1 26 52 9 35 3 37 0.88 2 14 0.23 1.7e+02 4.2 0.1 22 52 33 63 30 64 0.87 3 14 0.84 6.4e+02 2.4 0.0 22 44 61 83 58 90 0.86 4 14 7.2 5.5e+03 -0.6 0.0 26 51 93 118 85 120 0.79 5 14 0.078 60 5.7 0.0 22 46 117 141 113 148 0.87 6 14 2.9 2.2e+03 0.6 0.1 26 49 149 171 143 174 0.79 7 14 0.28 2.1e+02 3.9 0.1 19 46 170 197 166 203 0.86 8 14 0.53 4.1e+02 3.0 0.0 26 52 205 231 201 232 0.87 9 14 0.1 77 5.3 0.1 22 47 229 254 226 260 0.83 10 14 0.026 20 7.2 0.0 23 46 258 281 255 288 0.84 11 14 0.079 61 5.7 0.0 22 45 285 308 281 314 0.88 12 14 0.92 7e+02 2.2 0.1 24 52 315 343 310 344 0.85 13 14 0.085 65 5.6 0.0 23 52 342 371 337 373 0.85 14 14 5.8 4.5e+03 -0.3 0.0 22 44 369 391 366 395 0.85
Sequence Information
- Coding Sequence
- atgcaaAAGGATAAGAAACtgtataaatgtgaagtttgtggaaagagctttatccaGCCACATAATTTAAGGGGACATCTTTTgttgcatgagggtaagaaaccacataaatgtgaagtttgtgggacgAGCTTTACCAGGGCATCTACTTTAAGAGTACATCTTTTGCTGCAcgagggcaagaaaccacataaatgtgaagtttgtgggaagagctttacccaggcatctaCTTTAAGAGGACATTTTCTGATGCATGAGGGCAAGAAActgcataaatgtgaagtttgtggaaagagctttacccggacatcttatttaaggacccatcttttgatgcatgagggcaagaaaccacataattgtgtagtttgtgggaagagctttacacagGCTTCTAATTTAAAGGttcatcttttgatgcatgagggtaagaaaacacataaatgtaacatttgtggaaagagctttatctGCTTATCTAATTTAAGGGGACATATTTTGAGAcacgagggtaagaagccacataaatgtgaagtttgtgggaagagctttacccagccATCTCATTTAgggagacatcttttgatgcatgagggtaagaaactacataagtgtgaagtttgtgggaagagctttacccaggcatctaCTTTAAGGGGACATCTTTTGTTGCACGAGGATaagaagccatataaatgtgaagtttgtgggaagagctttactcagacaaatcatttaaggacacatcttttgatgcacATTGGtataaaaccacataaatgtgaagtttgtgggaagagctttacgcAGGCATCTAATTTAAGGGGACATCTTTTGACGCATGAGGGtaaaaagccacataaatgtgaaatttgtggaatgaGCTTTACCCAAGCATCTACTTTAAGGGGACATCTTTTGGTGCATGAGGGTAAGggaccacataaatgtgaagtttgtgggaagagctttaccaggGCATCTACTTTAAGGGTACATCTTTTGTTGCATGAGGGaaggaaaccacataaatgtgcagtttgtgggaagagctttacccaggcatctaCTTTAAGGGGACaccttttgatgcatgagggtaagaagccacataaatgtgaagtttgtgggaagagctttacccggaCATATTATTTAAGGATACATCTTTTGATGCACGAGGGTAAgtaa
- Protein Sequence
- MQKDKKLYKCEVCGKSFIQPHNLRGHLLLHEGKKPHKCEVCGTSFTRASTLRVHLLLHEGKKPHKCEVCGKSFTQASTLRGHFLMHEGKKLHKCEVCGKSFTRTSYLRTHLLMHEGKKPHNCVVCGKSFTQASNLKVHLLMHEGKKTHKCNICGKSFICLSNLRGHILRHEGKKPHKCEVCGKSFTQPSHLGRHLLMHEGKKLHKCEVCGKSFTQASTLRGHLLLHEDKKPYKCEVCGKSFTQTNHLRTHLLMHIGIKPHKCEVCGKSFTQASNLRGHLLTHEGKKPHKCEICGMSFTQASTLRGHLLVHEGKGPHKCEVCGKSFTRASTLRVHLLLHEGRKPHKCAVCGKSFTQASTLRGHLLMHEGKKPHKCEVCGKSFTRTYYLRIHLLMHEGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00995439;
- 90% Identity
- iTF_00995439;
- 80% Identity
- iTF_00995439;