Mvio000634.1
Basic Information
- Insect
- Metallyticus violacea
- Gene Symbol
- -
- Assembly
- GCA_030762175.1
- Location
- CM060830.1:17447001-17475708[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.86 6.5e+02 2.3 0.0 22 51 169 198 163 200 0.83 2 11 0.012 9.4 8.2 0.0 22 51 197 226 194 228 0.85 3 11 0.083 64 5.6 0.0 22 51 225 254 222 256 0.85 4 11 0.11 87 5.1 0.0 22 45 253 276 250 283 0.87 5 11 4.5 3.4e+03 0.0 0.0 26 44 285 303 279 309 0.87 6 11 0.0089 6.8 8.7 0.0 20 51 307 338 305 340 0.86 7 11 0.56 4.3e+02 2.9 0.0 22 48 337 363 334 367 0.84 8 11 0.12 91 5.1 0.0 22 49 365 392 362 396 0.87 9 11 0.087 66 5.5 0.1 22 52 394 424 391 425 0.88 10 11 0.11 81 5.2 0.3 17 52 417 452 413 453 0.85 11 11 0.92 7.1e+02 2.2 0.3 22 48 450 476 447 481 0.85
Sequence Information
- Coding Sequence
- ATGGATGTCAAACTAGAAATAAAGGAAGAACCAGAGGACCCTAATACATATTCATTTGAATTGCAACCagaaataaaagaggaaactAATTATGATGCTACTCATGAGACTCTGTTGGAAAATGAGGAGGAGAAAGAGGTTGATATAGCTTTCATGAAGCAGGACATCTCAGTTGAGGGATTAACTTTTCCATACAGTGATCAAAGGTTCAAACCTGGTTCAGTTTCATCTCAGaatatatcaaacatttgtgGAGCTCTACCACCAACAAAAAGCAGTCTTTGCGATAAAATGTATCAGGGAGTTACAAATGAATACAGCAACTCTGAGAAAACAAATACTAAACTGACAATTAAGGAAGAGGTGCTGGACCGTAATATGGATACATATGAGTTAAAATCTGAAGCTGTGGAAGAGAACTCATATAAGGCTGCTCATAATACTGGGTTGGAGACTGAGGTAAAGGAATCAGCATTGTTAAATCATATTTCCATTCATGAAGGCAAAAAACCATACAAGTGTGAAGTATGCGGAAAGAGTTTTACTCAGACAGGTCATATGGgtagacatcttttgattcatgagggtaagaagccccataagtgtgaagtttgtggtaagagctttactCAGGCAGGTAATATGAggaaacatcttttaattcatgagggcaagaaaccacataaatgtgaagtttgtaacAAGAGCTTTACTCACACAGGTAATATGAggaaacatcttttaattcatgaaggcaaaaaacctcataaatgtgaagtgtgtggtAAGAGCTTTACTCAGGCAGGTACTctgaggaaacatcttttgattcacgaaGGCAAGAAACTttataagtgtgaaatttgtggaaaaagttTTACCCAGACATCTTATTTAAGAactcattttttaattcataacaGTAAGAAACCCCAtatgtgtgaagtttgtggtaagagctttactCAGGCAAGCAGtttgaggaaacatcttttgattcatgatggtaagaagcctcataaatgtgaggtttgtggtaagagctttactCAGGCAAGTAGTcaaaggaaacatcttttgattcatgaaggtaagaagcctcataaatgtgaactttgtgCTAAGAGCTTTACTCAAGCAGGTAGTCTGAGGACACATCTTTTGGTTGTTCATGAAGGCAAGAAAccccataagtgtgaaatttgtggaaaaagttTTTATCATGCATCTAAATTGAGGAAACATCTCTCAGTCCATGAGAGCAGGAAGCCACTTGAGTGTGAAGTTTGCGGGAAGAATTTTTATCATGCATCTAAactaaggaaacatcttttgattcacgaaTGCAAAAAACCACTTAAGTGTGAATTATGTGGGAAGAGGTTTTCCCATTCATCTACTCTAAggaatcatcttttgattcacgaggTCTGTAAGAACCCCAACTTTGGAGGAGGCCATAATCATATAGTTGAAGAACCATTCACCAGTGCATGTCCAATAGTTCATGCTATGGGAGCAATGCAGAGTACCTTGGAAGGTGTTATAGGAGGATGTACTTGA
- Protein Sequence
- MDVKLEIKEEPEDPNTYSFELQPEIKEETNYDATHETLLENEEEKEVDIAFMKQDISVEGLTFPYSDQRFKPGSVSSQNISNICGALPPTKSSLCDKMYQGVTNEYSNSEKTNTKLTIKEEVLDRNMDTYELKSEAVEENSYKAAHNTGLETEVKESALLNHISIHEGKKPYKCEVCGKSFTQTGHMGRHLLIHEGKKPHKCEVCGKSFTQAGNMRKHLLIHEGKKPHKCEVCNKSFTHTGNMRKHLLIHEGKKPHKCEVCGKSFTQAGTLRKHLLIHEGKKLYKCEICGKSFTQTSYLRTHFLIHNSKKPHMCEVCGKSFTQASSLRKHLLIHDGKKPHKCEVCGKSFTQASSQRKHLLIHEGKKPHKCELCAKSFTQAGSLRTHLLVVHEGKKPHKCEICGKSFYHASKLRKHLSVHESRKPLECEVCGKNFYHASKLRKHLLIHECKKPLKCELCGKRFSHSSTLRNHLLIHEVCKNPNFGGGHNHIVEEPFTSACPIVHAMGAMQSTLEGVIGGCT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00995500;
- 90% Identity
- iTF_00995500;
- 80% Identity
- iTF_00995500;