Mvio024844.1
Basic Information
- Insect
- Metallyticus violacea
- Gene Symbol
- -
- Assembly
- GCA_030762175.1
- Location
- CM060837.1:3543677-3558880[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.069 53 5.8 0.1 19 47 122 150 114 155 0.80 2 10 0.085 65 5.6 0.0 22 46 153 177 150 184 0.86 3 10 1.3 1e+03 1.7 0.0 26 52 185 211 178 213 0.81 4 10 3 2.3e+03 0.6 0.0 22 48 237 263 232 267 0.83 5 10 0.0043 3.3 9.7 0.0 22 48 265 291 261 297 0.86 6 10 0.0096 7.4 8.6 0.0 22 46 349 373 345 379 0.89 7 10 0.15 1.1e+02 4.8 0.1 23 51 406 434 403 436 0.85 8 10 0.19 1.5e+02 4.4 0.1 22 46 433 457 430 464 0.87 9 10 2.8 2.1e+03 0.7 0.0 26 44 465 483 460 490 0.85 10 10 0.042 32 6.5 0.1 22 45 517 540 514 548 0.86
Sequence Information
- Coding Sequence
- ATGGGGCCTAGTTTTGTTTTGCAGCAAGACAACGCTAGAGTGCATACAGCCAGAGCCACCATGGCCATCCTAGAAGCTAGTCCTGTAGCCCCTCAGACTCTTCAACAGCTTGCAGATGCCCTTATTGAAGAATTGGGTAACATCCCACAAGAGAAGGTGCTTAGACTAATCAGGAGCTTGCCTCAAAGATATGAGGCACTTCATAGAATGATATGTGAAAGCAAAATGGATTCCAAAGTAGAAGTTAAAGAAGAACCACTTAATTGTCACACAGATTCAATAGAGTTGAAACTAGAAACTGAGGAGGAAAACTCTTGTGATAACCATGATGCTGTGTTAAAATATGAGAAACATCTTACGATTCATGAGAGTAAGAAACCACAtacatgtgaagtttgtgagaagagctttacacGTGCATCTACCTTGAAGATGcaccttttgattcatgagggtaagaaaccacataaatgtgcaaTTTGTGGAAAAAACTTTACCCGAGCATCTAacttaaagaaacatcttttgattcatgagggtaaaaaatcacatatatgtgaagtttgtggaaagagctttacttGGGCATCaaatttaagggaacatcttttaattcatgaggacaaaaaaccacataaatgtgaagtttgtggaaagaccTTTGCCAGAGCATCTACCTTAAAGTTACATATtatgattcatgaaggtaagaaaccacataaatgtgaagtttgcggAAAGAACTTTACTCAGGCATTTACCTTGAAAttgcatcttttaattcatgagggtaagaaaccacatacaTGTGAACTTTGTGGGAAGAACTTCACCCAGGCATCTAATTTAAGGGGACATCTTTGGGTTCATGGGGGTaacaaaccatataaatgtgaagtttgtgggaagagctttacacgAGCATCTACTTTGAAATTGCATCTTTCGATTCATGAGGGGAAggaaccacataaatgtgaagtttgtgggaagaggtTTACCTGGGCATCTCATTTAAaagaacatcttttgattcatgagggtaagaaaccacacaaatgtgaagtttgtgggaagagctttacacaggcatctaatttaagggaacatctttcaATTCATGAAGGTAAAAAGCgacacaaatgtgaagtttgtgggaaaagctttacccgGGTATCTACCTTGAAGttgcatcttttaattcatgagggtatggaaccacataagtgtgaagtttgtggaaagaccTTTACTCAGGCTTCTCATTTAAGagaacatcttttaattcatgagggtaagaaaccacacagatgtgaagtttgtgggaataGTTTTACCCAGGCTTctcatttaagggaacatcttttgattcacgaggGTAAAAAAGCgcacaaatgtgaagtttgtgaaaagagcTTTACCCGGGCATCAAATTTAAGggaacatattttcattcatgagggtaaaaaagtagataaatgtgaactttgtggaaagagctttactcgGGCATCTACATTGAAAttgcatcttttgattcatgagggtaagaagccacacaaatgtaaagtttgtgggaagagcttcaCTCAGTCATCTCATTTAAGAAAACATGTTTTGATTCATGAGAGTAAGAAAACGTATAATTGTGAAGTTTGTTGTAGGAACTTTACGCGGGCATCTTCCTTAAAGTTGCATCTTTCAGTTCATGgggataaatag
- Protein Sequence
- MGPSFVLQQDNARVHTARATMAILEASPVAPQTLQQLADALIEELGNIPQEKVLRLIRSLPQRYEALHRMICESKMDSKVEVKEEPLNCHTDSIELKLETEEENSCDNHDAVLKYEKHLTIHESKKPHTCEVCEKSFTRASTLKMHLLIHEGKKPHKCAICGKNFTRASNLKKHLLIHEGKKSHICEVCGKSFTWASNLREHLLIHEDKKPHKCEVCGKTFARASTLKLHIMIHEGKKPHKCEVCGKNFTQAFTLKLHLLIHEGKKPHTCELCGKNFTQASNLRGHLWVHGGNKPYKCEVCGKSFTRASTLKLHLSIHEGKEPHKCEVCGKRFTWASHLKEHLLIHEGKKPHKCEVCGKSFTQASNLREHLSIHEGKKRHKCEVCGKSFTRVSTLKLHLLIHEGMEPHKCEVCGKTFTQASHLREHLLIHEGKKPHRCEVCGNSFTQASHLREHLLIHEGKKAHKCEVCEKSFTRASNLREHIFIHEGKKVDKCELCGKSFTRASTLKLHLLIHEGKKPHKCKVCGKSFTQSSHLRKHVLIHESKKTYNCEVCCRNFTRASSLKLHLSVHGDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00995395;
- 90% Identity
- iTF_00995395;
- 80% Identity
- iTF_00995395;