Mvio001038.1
Basic Information
- Insect
- Metallyticus violacea
- Gene Symbol
- -
- Assembly
- GCA_030762175.1
- Location
- CM060830.1:30420180-30443795[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.3 1e+03 1.7 0.1 35 47 42 54 25 59 0.72 2 11 0.055 42 6.2 0.2 22 51 113 142 109 144 0.85 3 11 0.43 3.3e+02 3.3 0.3 22 47 141 166 138 172 0.86 4 11 0.029 22 7.0 0.1 22 45 169 192 166 199 0.83 5 11 0.013 9.9 8.2 0.1 22 51 197 226 193 228 0.84 6 11 0.24 1.9e+02 4.1 0.1 22 44 225 247 222 255 0.84 7 11 0.0073 5.6 9.0 0.2 22 54 253 285 249 285 0.91 8 11 3.3e-05 0.025 16.5 0.2 21 54 280 313 277 313 0.95 9 11 0.0095 7.2 8.6 0.1 22 52 309 339 307 340 0.88 10 11 0.13 1e+02 4.9 0.2 22 48 337 363 333 368 0.84 11 11 0.11 88 5.1 0.1 23 45 366 388 362 396 0.84
Sequence Information
- Coding Sequence
- ATGGATGTCAAACTAGAGGTTAAGGAAGAGGTACCAGACCACGATACATATTCTTTTGAACTGGAACCAGAAACTAAAGAGGAAAATACTTGTAATGCTGCTCATGACACTATAGTGGAGAATGAACAGGCATCTAATTTGAGGCACCATCTTTTGATTCACAGGGTCAAGAAGTCACTTAAGTGTGAAacttgtgggaagaactttaccaAGACATCTAGTTTGAGAGCACATCATCTTACTCATGAAGGCatgaagccacataagtgtgaagtttgtggaaagagctttacatATGCATATGAGTTGAGAATACATCACTTGATTCATGAgggaaagaagccacataaatgcgAAGTTTGTGAGAAGAGGTTCACCCAGGCAACAACTTTGAGacaacatcttttaattcatgaaggaaagaagccacataaatgcgaagtttgtgagaagagcttcaCCCATGCAACAACTTTGAGACATCATCTTTTACTTCATGAGGGTAAAAGAccccataaatgtgaaatttgtgggaagagttttacccaGCCATCTAATTTGAGGCAACATcatttaattcatgagggtaagaagccacataagtgtgaagtttgtgggttGAGCTTTATCCAGGCATCTACTTTGAGAcgacatcttttaattcatgaaggcAAGAAGCCCCACAAATGTCAGgtttgtggcaagagctttacTCAGGCGTCAACTTTGAGGCAACATGTTCTAAcccatgagggcaagaaaccctataagtgtgaaatttgtgggaatagctttacccaggcatctcATTTGAGAGTACATCTTGTTATACACAAGTGCGAGAAGCCTCATgtgtgtgaaatttgtgggaagggCTTTACCCAGGCATCAACTTTGAGGCAGCATCTTGTTATTCACAAGTTTGAGAAGCCTCATGTGTGTGAAGTTTGTAAtaagagctttacccaggcatcAACGTTGAgggaacatcttttaattcataagGGCAAGAAACCCCATAATTGTGAAGTATGTGGAAAGAACTTTACCCATTCATCAACTCTGAGacaacatcttttaattcattcaGGCAGAAAGCCCcacaagtgtgaagtttgtgaaaagaaATTTACACAGAAATCTACtttgaggaaacatcttttgactCATGAGGACAAGAAGCCCATTAACCTGAGTTTGTGA
- Protein Sequence
- MDVKLEVKEEVPDHDTYSFELEPETKEENTCNAAHDTIVENEQASNLRHHLLIHRVKKSLKCETCGKNFTKTSSLRAHHLTHEGMKPHKCEVCGKSFTYAYELRIHHLIHEGKKPHKCEVCEKRFTQATTLRQHLLIHEGKKPHKCEVCEKSFTHATTLRHHLLLHEGKRPHKCEICGKSFTQPSNLRQHHLIHEGKKPHKCEVCGLSFIQASTLRRHLLIHEGKKPHKCQVCGKSFTQASTLRQHVLTHEGKKPYKCEICGNSFTQASHLRVHLVIHKCEKPHVCEICGKGFTQASTLRQHLVIHKFEKPHVCEVCNKSFTQASTLREHLLIHKGKKPHNCEVCGKNFTHSSTLRQHLLIHSGRKPHKCEVCEKKFTQKSTLRKHLLTHEDKKPINLSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00995478;
- 90% Identity
- iTF_00995478;
- 80% Identity
- iTF_00995478;