Mvio025146.1
Basic Information
- Insect
- Metallyticus violacea
- Gene Symbol
- -
- Assembly
- GCA_030762175.1
- Location
- CM060837.1:14709762-14711285[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.74 5.7e+02 2.5 0.0 22 52 57 87 54 87 0.84 2 14 0.015 11 8.0 0.0 20 52 83 115 81 117 0.88 3 14 0.0063 4.8 9.2 0.1 22 52 113 143 110 145 0.87 4 14 1.6 1.2e+03 1.5 0.1 22 48 141 167 137 172 0.82 5 14 0.069 53 5.8 0.1 22 52 169 199 165 199 0.86 6 14 0.017 13 7.8 0.0 20 48 195 223 193 227 0.86 7 14 0.099 76 5.3 0.2 22 51 225 254 222 256 0.84 8 14 0.025 19 7.3 0.0 22 50 253 281 249 285 0.85 9 14 3.4 2.6e+03 0.4 0.0 22 50 281 309 278 313 0.80 10 14 8.4 6.4e+03 -0.8 0.0 22 45 309 332 305 338 0.80 11 14 0.72 5.5e+02 2.6 0.1 22 53 365 396 361 397 0.74 12 14 0.077 59 5.7 0.1 22 47 393 418 390 423 0.84 13 14 0.16 1.2e+02 4.7 0.1 22 50 421 449 417 452 0.83 14 14 0.039 30 6.6 0.1 22 50 449 477 445 481 0.84
Sequence Information
- Coding Sequence
- ATGTTCTCCTCCTCATCTTCTATTAAAGGTTCTGGACTTATATTaccttatgaaaataaaagaaataatttgattcATGAGGGGAGGAGGCctcataagtgtgaagtttgtggaaaaaacTTTACTTTGACATCTCTTTTAAATGAACATCTTTTGGTTCATGAGGATAAGAAAccacacaaatgtgaagtttgtgggaaggaTTTTACCAGACTTTCTAATTTAAGGATACACCTTTTCATACATAAGAGtcagaaaccacataaatgtgaagtttgtgggaagggTTTTACCCAGACATCttatttaaggaaacatcttttgattcatgagggaaaGAAGCCACATATATGTGAAATTTGCGGCAAAAATTTTACCCAAGTATCTAACTTgaggacacatcttttgattcatgaagaaaataaaccacataagtgtgaaatttgtggaaagaattttaaaaagatatattatttgagggagcatattttaattcatgaaggaaagaaaccacataaatgcgGAATTTGTGGGAAGTACTTTACCCGGCTTTCTaatttaaggactcatcttttTATACATAAAAGCCAGAAACCACATAACTGTGAGGTTTGTGGAAAAGGATTTGCCCAATCATTTACTTTGAGAgcacatcttttaattcatgagggcaagaaaccacacaaatgtgaagtttgtgagaaaagATTTACCGATGCAAGTACTTTGagaagacatcttttgattcatgagggtaagaaaccacataaatgtgaagtttgtgggaaaagcttcaCCCAGGCATCTAACTTAAGggaacatattttcattcatgaaggaaagaagccatataaatgtgaGCTCTGTGAAAAGAGCTTTACTCGGGCATCTAAATTGAGGGAacacattttaattcatgaaggaaagaagccacataagtgtgaagtctGTGGTAAGAGCTTTACTCGAATATCTAAATTGAGGGAACATATTATGATCCATGAAGGAAAGAAGTTAcgtaagtgtgaagtttgtggtaagagctttactCATGCTTCAACATTGAGGGAACATATTTTGATCCATGAaggaaagaaaccacataaatgtgaagtctgtggaaagagctttatccgGGCATCTAAATTAAgggaacatattttgattcatgaaggaaagaagccacatgtgtgtgaagtttgtggtaacaGCTTTACCCATACATCTACTTTGAGAAGACACTTATTGgttcatgaaggaaagaaaccaTATAAGTGTGAAAtctgtgagaagagctttacacGATCAGCTAAACTGAGGGAACacattttgattcatgaaggaaagaaaccacataagtgtcaagtttgtggcaagagctttacCCAAGCATCTACCTTCAGAAGACATTTATTGGTTCATGAGGGAAAGAAACCTTATAAGTGTGAAATCTGTGGAAAGGGCTTTACACAGGCAGCTAAACTGATGGAACATAGTTTGATTCACGAAGGAAAGAAACCATAG
- Protein Sequence
- MFSSSSSIKGSGLILPYENKRNNLIHEGRRPHKCEVCGKNFTLTSLLNEHLLVHEDKKPHKCEVCGKDFTRLSNLRIHLFIHKSQKPHKCEVCGKGFTQTSYLRKHLLIHEGKKPHICEICGKNFTQVSNLRTHLLIHEENKPHKCEICGKNFKKIYYLREHILIHEGKKPHKCGICGKYFTRLSNLRTHLFIHKSQKPHNCEVCGKGFAQSFTLRAHLLIHEGKKPHKCEVCEKRFTDASTLRRHLLIHEGKKPHKCEVCGKSFTQASNLREHIFIHEGKKPYKCELCEKSFTRASKLREHILIHEGKKPHKCEVCGKSFTRISKLREHIMIHEGKKLRKCEVCGKSFTHASTLREHILIHEGKKPHKCEVCGKSFIRASKLREHILIHEGKKPHVCEVCGNSFTHTSTLRRHLLVHEGKKPYKCEICEKSFTRSAKLREHILIHEGKKPHKCQVCGKSFTQASTFRRHLLVHEGKKPYKCEICGKGFTQAAKLMEHSLIHEGKKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00995380; iTF_00995416;
- 90% Identity
- iTF_00995380; iTF_00995416;
- 80% Identity
- iTF_00995380; iTF_00995416;