Mvio024843.1
Basic Information
- Insect
- Metallyticus violacea
- Gene Symbol
- -
- Assembly
- GCA_030762175.1
- Location
- CM060837.1:3528343-3529782[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.089 68 5.5 0.1 22 52 33 63 28 65 0.86 2 14 1.3 1e+03 1.7 0.0 22 52 61 91 57 92 0.85 3 14 0.11 85 5.2 0.1 21 45 88 112 85 119 0.86 4 14 1.1 8.1e+02 2.0 0.0 23 47 118 142 114 147 0.74 5 14 0.2 1.6e+02 4.3 0.1 21 48 144 171 140 175 0.83 6 14 0.49 3.7e+02 3.1 0.0 22 45 173 196 170 203 0.87 7 14 0.0092 7.1 8.6 0.1 23 52 230 259 226 261 0.86 8 14 2 1.5e+03 1.2 0.1 22 45 257 280 254 286 0.81 9 14 0.53 4e+02 3.0 0.0 22 47 313 338 310 343 0.83 10 14 0.12 94 5.0 0.1 22 50 341 369 337 373 0.83 11 14 1.4 1.1e+03 1.7 0.0 22 48 369 395 363 400 0.82 12 14 0.031 24 6.9 0.0 22 51 397 426 394 427 0.85 13 14 0.0038 2.9 9.9 0.0 20 51 423 454 421 456 0.86 14 14 1.2 9.3e+02 1.9 0.0 22 44 453 475 450 478 0.89
Sequence Information
- Coding Sequence
- ATGCATGAGGGAATGAAGTtgcataagtgtgaaatttgtggaaagagcttcaCCCGAGCATCTACATTGAAActgcatcttttgattcatgagggaaataaaccacacaaatgtgaagtttgtgcaaAGACCTTTCTCCGTGCTACTAATTTAAGGGAGCATGTaatgattcatgagggtaagaaaccacacatatgtgaagtttgtgggaagagctttacacgtgcatttaatttaaaggatcatattttgattcatgaggctAACAAACCACACAAATGCAacatttgtggaaagagctttacccgaGCATCTGCCTTGAAGaggcatcttttgattcatgatggTAAggaaccatataaatgtgaagtttgtgggaagaactttatcCGGGTATCTAACTTGAAAATGCATCTTTCAATTCATAAGGCTAAggaaccacataaatgtgaagtttgtgggaagatcTTAACTAATGCATCTGTTTTAAGgagtcatcttttgattcatgagggtaagaaaccatacaaatgtgaagtttgtgggaggAGCTTTACTCAGGCATCTCATTTAAGgggacatcttttgatacatggtGGCAAAAAAAcgcataaatgtgaaatttgtgggaagagctttagccgatcatttactttgaaattacattgtttgattcatgagggtaaagaaccgcataaatgtgaagtttgtgggaagaactttatcCAGGCATCtgatttaaggagacatcttttaattcatgaaaataaaaaaccacataaatgtgaaatttgtgataaaagcTTTATCCGTGCATTTGACTTGcagaaacatcttttgattcatgagcgTAAGAAACTACATAAATGTGAGGTTTGCGGGAAGAGCTTTAGCCAGGCATCTCATTTAAGTGGACATtctttgattcatgagggtaagaaaccacataattgtgaattttgtgggaaGGGCTTTACCCAGGCATATGATTTAAAGAGGCatgttttgattcatgaaggtaagaaaccacataaatgtgaagtttgtgggaagagctttatccagGCATTTGACTTAAGAAGACATTCCTTTATTCATGAgaataagaaaccacataaatgtgaagtttgcgaAAAGGGTTTTACCAGGGCATCTGATTTAAGGCaacattttttgattcatgagggtaaaaaaccacataaatgtgaagtttgtggaaggAGCTTTACCCAGTCATCTCATTTAAGGggacatcttttaattcatgagagtaagaaaccacataaatgtgaagtctgTGGAAAAAGCTTTACCCAAGCATACAATTTAAggggacatcttttgattcatgagggtaaaaaaccacataaatgtgaagtttgtgggaagagctttacaagAGCATTTGATTTAAGGAAACATCTCCTGACTCATAGATGA
- Protein Sequence
- MHEGMKLHKCEICGKSFTRASTLKLHLLIHEGNKPHKCEVCAKTFLRATNLREHVMIHEGKKPHICEVCGKSFTRAFNLKDHILIHEANKPHKCNICGKSFTRASALKRHLLIHDGKEPYKCEVCGKNFIRVSNLKMHLSIHKAKEPHKCEVCGKILTNASVLRSHLLIHEGKKPYKCEVCGRSFTQASHLRGHLLIHGGKKTHKCEICGKSFSRSFTLKLHCLIHEGKEPHKCEVCGKNFIQASDLRRHLLIHENKKPHKCEICDKSFIRAFDLQKHLLIHERKKLHKCEVCGKSFSQASHLSGHSLIHEGKKPHNCEFCGKGFTQAYDLKRHVLIHEGKKPHKCEVCGKSFIQAFDLRRHSFIHENKKPHKCEVCEKGFTRASDLRQHFLIHEGKKPHKCEVCGRSFTQSSHLRGHLLIHESKKPHKCEVCGKSFTQAYNLRGHLLIHEGKKPHKCEVCGKSFTRAFDLRKHLLTHR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00995419;
- 90% Identity
- iTF_00995419;
- 80% Identity
- iTF_00995419;