Basic Information

Insect: Metallyticus violacea
Gene Symbol: -
Assembly: GCA_030762175.1
Location: CM060830.1:16611101-16634415[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 8.9 6.8e+03 -0.9 0.0 26 51 185 210 179 211 0.80

2 13 0.0046 3.5 9.6 0.1 22 51 209 238 205 240 0.85

3 13 1.2 9.2e+02 1.9 0.2 22 52 237 267 233 268 0.86

4 13 0.072 55 5.8 0.1 22 49 265 292 261 296 0.84

5 13 0.038 29 6.7 0.0 22 49 293 320 290 323 0.84

6 13 0.012 9.3 8.3 0.1 20 45 319 344 316 353 0.86

7 13 3.9 3e+03 0.2 0.0 22 47 349 374 345 380 0.79

8 13 0.04 31 6.6 0.0 22 50 377 405 374 408 0.84

9 13 4.3 3.3e+03 0.1 0.0 22 45 405 428 401 435 0.83

10 13 0.11 82 5.2 0.1 22 51 433 462 428 465 0.85

11 13 7.9 6e+03 -0.7 0.0 23 46 462 485 457 491 0.78

12 13 0.0054 4.1 9.4 0.1 22 45 489 512 486 520 0.87

13 13 0.75 5.7e+02 2.5 0.0 22 46 545 569 542 576 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	8.9	6.8e+03	-0.9	0.0	26	51	185	210	179	211	0.80
2	13	0.0046	3.5	9.6	0.1	22	51	209	238	205	240	0.85
3	13	1.2	9.2e+02	1.9	0.2	22	52	237	267	233	268	0.86
4	13	0.072	55	5.8	0.1	22	49	265	292	261	296	0.84
5	13	0.038	29	6.7	0.0	22	49	293	320	290	323	0.84
6	13	0.012	9.3	8.3	0.1	20	45	319	344	316	353	0.86
7	13	3.9	3e+03	0.2	0.0	22	47	349	374	345	380	0.79
8	13	0.04	31	6.6	0.0	22	50	377	405	374	408	0.84
9	13	4.3	3.3e+03	0.1	0.0	22	45	405	428	401	435	0.83
10	13	0.11	82	5.2	0.1	22	51	433	462	428	465	0.85
11	13	7.9	6e+03	-0.7	0.0	23	46	462	485	457	491	0.78
12	13	0.0054	4.1	9.4	0.1	22	45	489	512	486	520	0.87
13	13	0.75	5.7e+02	2.5	0.0	22	46	545	569	542	576	0.82

Sequence Information

Coding Sequence: ATGGAGGTTAAACTAGAGATTAAGGAAGAACTGCTGGACCATGATAATTATTCAGTTGAGTTGAAAGCAGAAAATAAGAAGGATCATTTTTGTGGTGTCGCTCAAGATGCTGTGTTGGAGGCTGATGTAAAGTGTCAATGCATCATAAATGAATGCAGTGACTTAGAGAAAAGGGATATTAAACTAGAACTTAAGGAAGAACCACTGGACCATGATGCATATTCAGATCCATTGGCAGCAGAAAATATGAATGAGAGTTTTTATACCACTGATAATGCCATTTTGGAGGATGAGATAAAACACCATGAGGACCCAGACTTTCATCCTCACTTCAAAGAGGTTCAGCAACCTTTCTTCAAAGTCCCACATCTGACTGTACACCCTGACAGTCAAACACAATGTAATCTCCTCAAGGATCTGTCTACCGCACTGAAGAGCTACACACAGAACAAAACACCACTgcCACTTACAGAAGACCTTTCCAGCTATTTGGACAATTCACCTGCTTCTTTAATAAAGGTTGCATTGAAAATTAAGGATGATAAATCCCATAAATGCAAAGtatgtggaaagagctttactaAAGCACCTCATTTGAgagaacatcttttgattcataagggACAGAAACCCCATACGTGTGAAATTTGTAACAAAAACTTTACTCAGACATCTagtttgaagaaacatcttttgattcatgagggcaagaaaccttATAAGTGTGAAATGTGTGAGAAGAGATTTACTCAGACATCTCATTTGAgagtacatattttaattcatgagtgcaagaagccacataaatgtgaaatatgtggcAAGAGCTTTACTCATGGCTCTAATTTAAGAAAACATGTTTTGATTCATGATGGcaaaaagccacataaatgtgaagtttgtgggaagagctttacacagTCATCTAGTTTGAGGGGACATCTTCTTATTCATCAAGGCAAGAAGCCCCATAATTGTGACATTTGTAAGGAAAGCTTTACACATATTTCTAACCTGAGAAAACATCTTCTGAGTCACGAAGGCAAGAAAccccataagtgtgaaatttgtgggaagaccTTCACACGGACATCTCATttgaaagaacatatttttattcatgagggcaagaagccccataaatgtgatatttgtggaaagagctttacacaTACATCTAATTTGAGgaagcatattttaattcatgagggtaagaagccccataaatgtgatacatgtgggaagagctttatccaaGCTTCGGCTCTGAAGCAACATCTGTTAACTCATGAAGATAAGAAGCCCCAtaattgtgaagtttgtggtaaaagctttacccaggcatctcATTTGCGtgaacatcttttaattcatgaaggtAGGAAGCctcataagtgtgaaatttgtgggaagagctttactcataTATCTCATTTGAGGGGACATAtcttgattcatgagggcaaaaagccacataagtgtgaagtttgtgaaaagagATTTACCCAGTCATCCAATTTGAGGAAACatgttttgattcatgagggaagGAGGCCATATAAATGTAAAGTATGTGGAAAGGACTTTACTCAACTATCTTCACTAGGCACACAtaatttgattcatgagggcaagaagccacacaaatgtgaagtttgtggaaagagttttacccTAGCATTCAATATGAGAAAGCATCTTTTGACTCATGAGGGCAAAAAACCCCATAAGTGTGAAGaatgtgggaagagctttactaaACTTTCATCACTAGAAAAACATCATTTGCTTCATGAGGAAAAGAAATCACATATTATGTGA
Protein Sequence: MEVKLEIKEELLDHDNYSVELKAENKKDHFCGVAQDAVLEADVKCQCIINECSDLEKRDIKLELKEEPLDHDAYSDPLAAENMNESFYTTDNAILEDEIKHHEDPDFHPHFKEVQQPFFKVPHLTVHPDSQTQCNLLKDLSTALKSYTQNKTPLPLTEDLSSYLDNSPASLIKVALKIKDDKSHKCKVCGKSFTKAPHLREHLLIHKGQKPHTCEICNKNFTQTSSLKKHLLIHEGKKPYKCEMCEKRFTQTSHLRVHILIHECKKPHKCEICGKSFTHGSNLRKHVLIHDGKKPHKCEVCGKSFTQSSSLRGHLLIHQGKKPHNCDICKESFTHISNLRKHLLSHEGKKPHKCEICGKTFTRTSHLKEHIFIHEGKKPHKCDICGKSFTHTSNLRKHILIHEGKKPHKCDTCGKSFIQASALKQHLLTHEDKKPHNCEVCGKSFTQASHLREHLLIHEGRKPHKCEICGKSFTHISHLRGHILIHEGKKPHKCEVCEKRFTQSSNLRKHVLIHEGRRPYKCKVCGKDFTQLSSLGTHNLIHEGKKPHKCEVCGKSFTLAFNMRKHLLTHEGKKPHKCEECGKSFTKLSSLEKHHLLHEEKKSHIM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00995444;
90% Identity: iTF_00995444;
80% Identity: iTF_00995444;