Mvio000608.1
Basic Information
- Insect
- Metallyticus violacea
- Gene Symbol
- -
- Assembly
- GCA_030762175.1
- Location
- CM060830.1:16952559-16953977[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.55 4.2e+02 3.0 0.0 26 52 37 63 30 65 0.86 2 10 0.082 63 5.6 0.0 22 51 61 90 57 92 0.84 3 10 0.22 1.6e+02 4.3 0.0 22 52 89 119 86 121 0.84 4 10 0.0084 6.4 8.8 0.0 20 51 143 174 140 176 0.86 5 10 0.074 56 5.7 0.0 22 51 173 202 170 204 0.84 6 10 0.027 21 7.1 0.1 22 52 201 231 198 233 0.85 7 10 0.084 64 5.6 0.0 22 52 229 259 226 261 0.85 8 10 0.099 76 5.3 0.0 22 48 341 367 330 371 0.86 9 10 0.065 50 5.9 0.0 22 52 369 399 366 401 0.85 10 10 5.8 4.4e+03 -0.3 0.0 20 44 395 419 393 426 0.83
Sequence Information
- Coding Sequence
- ATGCATGACTCTAAAATAGCTCATAGATGCAAATTCTGTGcaaaaagtttcattcattcatcagacttgagaaatcacattttgattcatgagggcaagaagctacataagtgtgaagtttgtggtaagatCTTGACCCAAGCATCTTCTTTGAAggatcatcttttgattcatgagggcaagaaaccccATATGTGTGaattttgtggaaagagttttacccaTGCGTCTAActtgaggaaacatcttttgattcatgatggCAAGAAGCCctataagtgtgaagtttgtgagaaagGCTTTGCTGATGCATCTAATTTGAGAgtgcatcttttgattcatgagggcaagaagccacataaatgtgaagtttgtgggaagagctttactcatgCTTTTACTTTAAAGGGACATCTCTTAACTCACGAGTCCAAGAAACCatataagtgtgaaatttgtggaaagtggTTTACTCAGACATCTCATTTGAGACAACATCTATTAATTCATGAAGGCAAGAAGCCCCATAAGTGTGAAATATGTGGAAAAGGCTTTACTGATACATCTAATTTGAGaggacatcttttgattcatgagggcaagaagcctcataaatgtgaagtttgtgggaagaactttacccaAGCATCTAATATGAGGacgcatcttttgattcatgaggaaaagaagccacataagtgtgaagtttgtggtaagagctttaccCAAGCATCTTCTTTAAGggatcatcttttgattcatggaGGAAAGAAGCCCCATGTCTGTGAAaattgtggaaagagttttacccaTGCATCCTATTtgagaaaacatattttgattcatgatggCAAGAAGTCACATAAGTGTCAAACATGTGGGAAAGGCTTTGCTGATGCATCTAATTTGAGAGTGCATCATTTGATTCATGAGAGCAAGAAGttacataagtgtgaagtttgtgggaataGCTTTACTCATGCTTTTACTCTAAAGGGGCATCTCTTAACTCATGACTACCAAAAACCatttaagtgtgaaatttgtggaaaggggTTTATCCAGACATTACATTTGAggaaacatcttttaattcatgaaggcaagaagccccataaatgtgaaatttgtggaaaagacTTCACTGATGCATCTAATTTGAGGGggcatcttttgattcatcagggcaaaaagccacataagtgtggagtttgtgggaagagctttacccgggTGTATCATTTGAAAgagcatcttttgattcatgagggcaagaaggcacataaatgtgatatttgtggAAAAGGCTTTACTAGTACATCTACTTGGAGGGCACACCTTTTAATTCATAAAGGCAAGAAGgtacataaatgtgaagtgtgtggaAAGAGATTTACTCAAGCATCTCATTTAAGATGA
- Protein Sequence
- MHDSKIAHRCKFCAKSFIHSSDLRNHILIHEGKKLHKCEVCGKILTQASSLKDHLLIHEGKKPHMCEFCGKSFTHASNLRKHLLIHDGKKPYKCEVCEKGFADASNLRVHLLIHEGKKPHKCEVCGKSFTHAFTLKGHLLTHESKKPYKCEICGKWFTQTSHLRQHLLIHEGKKPHKCEICGKGFTDTSNLRGHLLIHEGKKPHKCEVCGKNFTQASNMRTHLLIHEEKKPHKCEVCGKSFTQASSLRDHLLIHGGKKPHVCENCGKSFTHASYLRKHILIHDGKKSHKCQTCGKGFADASNLRVHHLIHESKKLHKCEVCGNSFTHAFTLKGHLLTHDYQKPFKCEICGKGFIQTLHLRKHLLIHEGKKPHKCEICGKDFTDASNLRGHLLIHQGKKPHKCGVCGKSFTRVYHLKEHLLIHEGKKAHKCDICGKGFTSTSTWRAHLLIHKGKKVHKCEVCGKRFTQASHLR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00995425;
- 90% Identity
- iTF_00995425;
- 80% Identity
- iTF_00995425;