Mvio043260.1
Basic Information
- Insect
- Metallyticus violacea
- Gene Symbol
- -
- Assembly
- GCA_030762175.1
- Location
- CM060843.1:104249362-104253045[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0091 7 8.7 0.4 21 45 87 111 74 118 0.85 2 11 1.2 8.9e+02 1.9 0.0 21 45 115 139 112 144 0.88 3 11 0.55 4.2e+02 3.0 0.1 20 45 143 168 135 174 0.81 4 11 0.0073 5.6 9.0 0.2 22 50 174 202 167 205 0.84 5 11 1.2 9e+02 1.9 0.7 20 45 201 226 196 230 0.85 6 11 0.0027 2 10.4 0.3 17 48 227 258 219 260 0.87 7 11 0.16 1.3e+02 4.6 0.0 21 45 260 284 258 289 0.88 8 11 0.011 8.4 8.4 0.0 19 43 315 339 305 345 0.87 9 11 0.33 2.5e+02 3.7 0.0 22 45 346 369 342 374 0.86 10 11 0.067 52 5.9 0.7 19 50 372 403 365 406 0.83 11 11 0.057 44 6.1 0.1 22 48 404 430 399 436 0.88
Sequence Information
- Coding Sequence
- ATGGAGAAGGCATCAGAATCAAAACTTGGCAGCCCTAGAGTACTGAACAATCAGCAGCAACTGATGGTGCCATCACCAGAAATCCACTGCGGGTTGGCAGAAAACACAGTGGCACGTGAACGTATACTTCAGGAAGATATCTGGCAAGAGTCTTTGGTGCACACCACTTCAGCTAGCAACACTGTAACTTTGCCCACTATAACTACAACATCTGGCAATACTTCAAGATCTCACACAGTAGAACCTGCTCAGCCATCCCCAGAGAGGCCATATAGATGTGATATATGTGGAAAGGCATTCACACAGGCTCGCCATCTCACACGCCACAGCATGGTTCATACAGGGGAGAAGCCATTTTCCTGTAAAGAGTGCTTAAAGGGATTCTCACAGCAGAGTGACCTCACTCGGCATGTTCGTCGCATCCACACAGGAGAAAAACCATATGTCTGTGGTATCTGCATGAAAGGCTTCTCTCAAAGGGGCGACTTTATTAGACATACCCAGCGTGTTCATGCAGAGAATAAACCACATGCATGTCCTGTCTGCCTGAAGAATTTTGCCCAGTTTGGGGACCTCAAGAGACACAAGCGTCGTGTGCATGCTGCTGAGAAGCCATATCCATGCCTGGTGTGCTTGCGTAGATTTAGCCAACAGGGGGACCTGACGCGACATACCCGTCGTGTTCACACTGGTGAGCGTCCATTTACCTGCTCTGTATGCATAAAAAGCTTTGTGCAGAGGGCTGATCTTAATCGCCATACTCGCCTTATTCACACTGGTGAACGGCCCTTCACATGTGACTTGTGCCTCAAAGGTTTTGTTCAATTAGGTGATCTGACGAGGCATGTGAGACGAGTCCATGGTGGTGAGGGCAAGCAATACCATAGTTCACCCTGCATAATGAATCCCATTGCTCCTGACCTTACCAGATCCTCTGAAGATGCTGATGCTGAACGACCTTTTGTATGTGATGTATGTGGCAAAACATTTATGCAAGCTCGCCACCTCACCCGTCACAACTTTGTACATACTGGACAGCGCCCCTTTTCTTGTACCATATGTCTGAAGGGGTTTGTTCAGGCTGGTGATCTTACAAGACACACACGCAGGGTTCACACAAAAGAGAAACCCTTCTCCTGTCAGGTATGCCTAAAGAGTTTTGTCCAAAGAACAGATCTCACAAGACATACAGTGCGTGAGCATACTGCAAACAAGCCATTCCCATGTAACATTTGCCTGAAAACCTTCATTCAGGCTGGAGACCTAGCACGTCACATGAAGCGCATGCACACAGGAGATGAAAAGCCATTTTGTGATGTTTGCATCTCCAACTATACACAAGCTGGAATGACACAGCATACATATGATCGTGACACTTCTGCAGAAAAAACATGTGAGAAAGCCAATGAGTTTTCTAATAACTCTCATCAATTACACTCAGTTACTGACAAGAATATTCAGTATGCTAATATTATGCAAGGTGACAGTATGCTGACCATCAGCCAGTCCCAGATCATCACAGCTGAGGCATATGTGACAATGGCTCAGGAAATTTCAAAGACATCTTGTTCAAGTAAAATTGGAAATGGGCATAAGACATTTAACTGTGAGCTTCAAAATGCGAACAAAATTTTCCCTGTGTCCAGTACAGGACATTAA
- Protein Sequence
- MEKASESKLGSPRVLNNQQQLMVPSPEIHCGLAENTVARERILQEDIWQESLVHTTSASNTVTLPTITTTSGNTSRSHTVEPAQPSPERPYRCDICGKAFTQARHLTRHSMVHTGEKPFSCKECLKGFSQQSDLTRHVRRIHTGEKPYVCGICMKGFSQRGDFIRHTQRVHAENKPHACPVCLKNFAQFGDLKRHKRRVHAAEKPYPCLVCLRRFSQQGDLTRHTRRVHTGERPFTCSVCIKSFVQRADLNRHTRLIHTGERPFTCDLCLKGFVQLGDLTRHVRRVHGGEGKQYHSSPCIMNPIAPDLTRSSEDADAERPFVCDVCGKTFMQARHLTRHNFVHTGQRPFSCTICLKGFVQAGDLTRHTRRVHTKEKPFSCQVCLKSFVQRTDLTRHTVREHTANKPFPCNICLKTFIQAGDLARHMKRMHTGDEKPFCDVCISNYTQAGMTQHTYDRDTSAEKTCEKANEFSNNSHQLHSVTDKNIQYANIMQGDSMLTISQSQIITAEAYVTMAQEISKTSCSSKIGNGHKTFNCELQNANKIFPVSSTGH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00995534;
- 90% Identity
- iTF_00995534;
- 80% Identity
- iTF_00995534;