Basic Information

Insect: Metallyticus violacea
Gene Symbol: -
Assembly: GCA_030762175.1
Location: CM060830.1:16980986-17015527[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.054 41 6.2 0.0 22 51 172 201 169 203 0.83

2 13 0.086 66 5.5 0.0 22 51 200 229 195 230 0.83

3 13 0.0034 2.6 10.0 0.1 20 52 226 258 224 260 0.86

4 13 0.43 3.3e+02 3.3 0.0 22 46 284 308 280 315 0.86

5 13 0.63 4.9e+02 2.8 0.0 26 51 316 341 309 343 0.82

6 13 0.3 2.3e+02 3.8 0.1 23 47 341 365 336 371 0.82

7 13 0.86 6.6e+02 2.3 0.1 20 52 366 398 362 399 0.87

8 13 1.9 1.5e+03 1.2 0.0 23 47 397 421 391 426 0.83

9 13 0.09 69 5.5 0.0 22 52 424 454 420 456 0.85

10 13 8.4 6.4e+03 -0.8 0.0 22 46 452 476 449 482 0.79

11 13 0.38 2.9e+02 3.5 0.2 22 43 480 501 475 508 0.88

12 13 0.013 9.7 8.2 0.0 22 46 508 532 502 538 0.86

13 13 0.15 1.2e+02 4.7 0.1 22 52 643 673 620 675 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.054	41	6.2	0.0	22	51	172	201	169	203	0.83
2	13	0.086	66	5.5	0.0	22	51	200	229	195	230	0.83
3	13	0.0034	2.6	10.0	0.1	20	52	226	258	224	260	0.86
4	13	0.43	3.3e+02	3.3	0.0	22	46	284	308	280	315	0.86
5	13	0.63	4.9e+02	2.8	0.0	26	51	316	341	309	343	0.82
6	13	0.3	2.3e+02	3.8	0.1	23	47	341	365	336	371	0.82
7	13	0.86	6.6e+02	2.3	0.1	20	52	366	398	362	399	0.87
8	13	1.9	1.5e+03	1.2	0.0	23	47	397	421	391	426	0.83
9	13	0.09	69	5.5	0.0	22	52	424	454	420	456	0.85
10	13	8.4	6.4e+03	-0.8	0.0	22	46	452	476	449	482	0.79
11	13	0.38	2.9e+02	3.5	0.2	22	43	480	501	475	508	0.88
12	13	0.013	9.7	8.2	0.0	22	46	508	532	502	538	0.86
13	13	0.15	1.2e+02	4.7	0.1	22	52	643	673	620	675	0.90

Sequence Information

Coding Sequence: atgGACTTTAAACTGGAGATTAAGGAAGAGCCCCTTGCCAATGATGAGTTGAAATGGCTGGTAACTGAGGAAGAAAACTCCTGTCGTACTGCCCATGAGACTGAGGCACTGGCTAGTAGTGCAAATTCTTGTGATGTCATAAATAATTGCACTGATTTGGAGAAAATGAATATTGAGCTAGAGATTAAGGAAGAATTGCTGGAACCTGATCAAGATTCAATTGATTTCAAATCCAAAAATGTAGAAGAAGATTCATACAGAGTTGTTCATAACACTTTGTTGGAAAACGAGTTAAAGGGACAAAAAGAGCTAGATCTAGCTTTAATGAAGGAAGAGATCACAATTGAGGAATCAACATTTCCATACACTGATCCAGGGATCTTCACTAACACTTCTTCTTTAAAggaacatttattaatacatgacTCTAAAACAGCACATAGCTACAAATTCTGTGTAAAAAGTTTTACTCATGCATCAGACTTgagaaatcatattttgattcatgaggggaAGAAGCcatataagtgtgaagtttgtggaaagtgTTTTACCCGTGGATCCAActtgaggaaacatcttttggttcatgagggcaagaagccaaaTAAGTGTGAACtgtgtgggaagagctttatccatGCATCAAActtgaggaaacatcttttgattcatgacagcaaaaagccacataagtgtgaaatttgtggaaagagttttacccGTACATCCAACTTGAGGAAGCATCtattgattcatgagggcaagaagccacataagtgtgaggtttgtggaaagagctttacccatgCTTCTATTTTAAAGGGACATCTCTTAACTCATGAGTGCCAGAAACCCtttaagtgtgaaatttgtggaaagtggTTTACCCAGACATCTCATTTGAAacaacatcttttaattcatgaaggcAAAAAGTCCCATAAGTGTGAAATCTGTGGAAAAAGCTTTGCTGATACATCTAATTTGAGGgggcatcttttgattcatgagggcagaaagccacataaatgtgaagtttgtgggaagagctttacccaagcATCTAATATGAGGACACATCGTTTGATTCATGAAAGCAAAAAGCCACATAAGtgtaaaatttgtggaaagaactttacCCGTGCTTTTGCTTTAAAGGGACATCTCTTAACTCATGAGTACAAGAAaccatttaattgtaaaatttgtggaaaggggTTTATCCAAATATCTCATTTGAAacaacatcttttaattcatgaggataagaagccccataagtgtgaaatttgtggaaaaggcTTCAATGATGCATCTAATTTCAggaaacatcttttaattcatgatggcaagaagccacataagtgtgatgTTTGtaggaagagctttacccatgaTTTTAATATAAAGGGACATCTGTTAACTCATGAGTGCAAGAAACCatttaagtgtgaaatttgtggaaagtgcTTTACACAGACATCACATTTGAGACAACATCGTTTAATTCATGATGGCAAGAAGCCCCATAAGTGTGAAATCTGTGGGAAAGGCTTTACTGATAAATCTAATTTGAGGAggcatcttttgattcatcagGGCAAAAAGtcatataattctaaaatttgtgAGAAAGTTTCACCGAGGGGGCatgttttgattcatgagggcaagaagccacataagtgtgaagtttgtgggaagagctttatctgGGGGTCTCATTTCAaagaacatcttttgattcatgaagacAAGAaggcacataaatgtgaagtctgtgggaaaagctttacccgGGTGTCTCATTTGAAAGAActtcttttgattcatgagggcaagaagtcacataaatgtgaaaattgtggaaagagctttactctAGCATCTAATATgaggacacatcttttgattcatgagggcaagaagccacataagtgtgaagtttgtggcaaaAGCTTTACCCAAGCATCTTCTTTGAGggatcatcttttgattcatgagggcaagaagccccaTGCATGTGAAcattgtggaaagagttttatccATGCATCCCATTTGAAAacacatattttgattcatgaaggcaaaaAACCATATATGTGGGAAAGGCTTTGTTGGTGCATCTAA
Protein Sequence: MDFKLEIKEEPLANDELKWLVTEEENSCRTAHETEALASSANSCDVINNCTDLEKMNIELEIKEELLEPDQDSIDFKSKNVEEDSYRVVHNTLLENELKGQKELDLALMKEEITIEESTFPYTDPGIFTNTSSLKEHLLIHDSKTAHSYKFCVKSFTHASDLRNHILIHEGKKPYKCEVCGKCFTRGSNLRKHLLVHEGKKPNKCELCGKSFIHASNLRKHLLIHDSKKPHKCEICGKSFTRTSNLRKHLLIHEGKKPHKCEVCGKSFTHASILKGHLLTHECQKPFKCEICGKWFTQTSHLKQHLLIHEGKKSHKCEICGKSFADTSNLRGHLLIHEGRKPHKCEVCGKSFTQASNMRTHRLIHESKKPHKCKICGKNFTRAFALKGHLLTHEYKKPFNCKICGKGFIQISHLKQHLLIHEDKKPHKCEICGKGFNDASNFRKHLLIHDGKKPHKCDVCRKSFTHDFNIKGHLLTHECKKPFKCEICGKCFTQTSHLRQHRLIHDGKKPHKCEICGKGFTDKSNLRRHLLIHQGKKSYNSKICEKVSPRGHVLIHEGKKPHKCEVCGKSFIWGSHFKEHLLIHEDKKAHKCEVCGKSFTRVSHLKELLLIHEGKKSHKCENCGKSFTLASNMRTHLLIHEGKKPHKCEVCGKSFTQASSLRDHLLIHEGKKPHACEHCGKSFIHASHLKTHILIHEGKKPYMWERLCWCI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00995417;
90% Identity: iTF_00995417;
80% Identity: iTF_00995417;