Mvio000605.1
Basic Information
- Insect
- Metallyticus violacea
- Gene Symbol
- -
- Assembly
- GCA_030762175.1
- Location
- CM060830.1:16853955-16857439[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.1 8.6e+02 2.0 0.2 23 48 43 68 39 72 0.79 2 12 0.0092 7 8.7 0.1 22 52 70 100 67 101 0.87 3 12 0.16 1.2e+02 4.7 0.0 22 48 98 124 93 128 0.83 4 12 0.12 88 5.1 0.0 22 51 126 155 123 157 0.85 5 12 0.37 2.8e+02 3.5 0.0 20 52 152 184 149 186 0.86 6 12 0.3 2.3e+02 3.8 0.0 22 52 182 212 179 213 0.87 7 12 0.017 13 7.8 0.1 20 52 208 240 206 242 0.87 8 12 0.00081 0.62 12.0 0.1 22 52 238 268 235 270 0.85 9 12 2.2 1.7e+03 1.0 0.0 23 51 267 295 264 296 0.80 10 12 0.24 1.8e+02 4.1 0.0 22 46 294 318 291 324 0.81 11 12 0.17 1.3e+02 4.6 0.0 22 45 350 373 347 378 0.88 12 12 0.56 4.3e+02 2.9 0.1 23 45 379 401 375 404 0.74
Sequence Information
- Coding Sequence
- ATGAATATTCAGTCCAAAGTGGCAAGCTTCACTATGCAGggCAAGAAGCACCATGAATataaagtttgtgggaagagcttaaCTCAAGCACTTTCCTTCACAGACATTTTGGTTCATGAGAGCAAAAAGGTACATaggtgtgaagtttgtggaaagagttttacccaAGCATGTCATTTGAGGGtccatcttttgattcatgagggcaagaagccccaTACATGTAAACTTTGTGGAAAAAGTTTTACCCAAGCATCTCATTTAAAGAGACATTTTTcaattcatgagggcaagaaaccacataaatgtgaagtatgtgggaagagctttactcaagCACTTTCTTTGAGAGATcaccttttgattcatgaaggcaagaaaCCCCGTAAGTGTGAAATATGTGGGAAGGGATTTACCCAGGCATCTGctttgaagaaacatctttttgTTCATCAAGGTAGGAAGCCACatgaatgtgaagtttgtgggaagggcTTTACTCAAGTATCTTTTTTGAGAGATCATCTCTTCATTCATGAAGGTAAAAAGCCATATATGTGTGaattttgtggaaagagttttgcCAAATCAACTCATTTGAGGacgcatcttttgattcatgatagtaataaaccacataaatgtgaagtttgtgggaagagctttacccaggctGTTTCTTTGAGgcatcatcttttgattcatgagggcaaaaagcccCATAACTGTGTAATTTGTGCCAAAGGATTTACCCAGGCATCTAATTTgagaaaacatcttttgattcatgaaggtaagaagccacataagtgtgaaatttgtgggaaaggCTTTGTTGACACATCTAAAATGAGGATGCATCTTTtagttcatgataccaaaaagcCACATACATGTGAACTTTGTGGAAAGGGTTTTATCCATACATCTTAtttgaggaaacatcttttgatgcatgagagCAAGAAGTCACTCAAGTCTGAAGTTTATCAGAAAGGCTTTCCCCAAGAATCTTCTTTGAGTGAagatattttgattcatgaagagaagaagccacataagtgtgaaatttgtgggaaaggCTTTACTGACAAATCTAATTTGAGAGCACATCTTTTCATTCATGAGGGTAAGaggccacataaatgtgaagtttgcggGAAGAGCTTTATTCGAGCATCTCAtttgaggaaacatcttttgattcatgagaaatag
- Protein Sequence
- MNIQSKVASFTMQGKKHHEYKVCGKSLTQALSFTDILVHESKKVHRCEVCGKSFTQACHLRVHLLIHEGKKPHTCKLCGKSFTQASHLKRHFSIHEGKKPHKCEVCGKSFTQALSLRDHLLIHEGKKPRKCEICGKGFTQASALKKHLFVHQGRKPHECEVCGKGFTQVSFLRDHLFIHEGKKPYMCEFCGKSFAKSTHLRTHLLIHDSNKPHKCEVCGKSFTQAVSLRHHLLIHEGKKPHNCVICAKGFTQASNLRKHLLIHEGKKPHKCEICGKGFVDTSKMRMHLLVHDTKKPHTCELCGKGFIHTSYLRKHLLMHESKKSLKSEVYQKGFPQESSLSEDILIHEEKKPHKCEICGKGFTDKSNLRAHLFIHEGKRPHKCEVCGKSFIRASHLRKHLLIHEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00995480;
- 90% Identity
- iTF_00995480;
- 80% Identity
- iTF_00995480;