Basic Information

Insect: Metallyticus violacea
Gene Symbol: -
Assembly: GCA_030762175.1
Location: CM060832.1:1228381-1231918[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 2.1 2.6e+02 4.2 0.4 3 23 191 211 190 211 0.82

2 16 1.5 1.8e+02 4.7 4.5 1 19 217 235 217 239 0.92

3 16 0.011 1.3 11.4 0.7 2 19 255 272 254 274 0.92

4 16 0.039 4.8 9.6 2.2 1 23 281 303 281 303 0.92

5 16 6.9e-06 0.00084 21.4 0.6 2 23 310 332 309 332 0.95

6 16 0.00013 0.016 17.4 1.1 1 23 338 360 338 360 0.98

7 16 0.0009 0.11 14.8 0.1 1 23 366 388 366 388 0.97

8 16 5e-05 0.0061 18.7 3.0 1 23 394 416 394 416 0.95

9 16 0.6 73 5.9 0.5 1 23 427 452 427 452 0.95

10 16 4.4e-07 5.4e-05 25.2 0.5 1 23 470 492 470 492 0.98

11 16 1.8e-05 0.0021 20.2 3.6 1 23 498 520 498 520 0.98

12 16 1.3e-06 0.00016 23.7 1.2 1 23 526 548 526 548 0.98

13 16 0.63 76 5.8 0.3 3 23 556 576 554 576 0.96

14 16 0.00045 0.055 15.7 2.9 1 20 582 601 582 604 0.94

15 16 1.4e-07 1.7e-05 26.8 0.2 1 23 610 632 610 632 0.98

16 16 3.3e-05 0.004 19.3 2.3 1 23 638 660 638 660 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	2.1	2.6e+02	4.2	0.4	3	23	191	211	190	211	0.82
2	16	1.5	1.8e+02	4.7	4.5	1	19	217	235	217	239	0.92
3	16	0.011	1.3	11.4	0.7	2	19	255	272	254	274	0.92
4	16	0.039	4.8	9.6	2.2	1	23	281	303	281	303	0.92
5	16	6.9e-06	0.00084	21.4	0.6	2	23	310	332	309	332	0.95
6	16	0.00013	0.016	17.4	1.1	1	23	338	360	338	360	0.98
7	16	0.0009	0.11	14.8	0.1	1	23	366	388	366	388	0.97
8	16	5e-05	0.0061	18.7	3.0	1	23	394	416	394	416	0.95
9	16	0.6	73	5.9	0.5	1	23	427	452	427	452	0.95
10	16	4.4e-07	5.4e-05	25.2	0.5	1	23	470	492	470	492	0.98
11	16	1.8e-05	0.0021	20.2	3.6	1	23	498	520	498	520	0.98
12	16	1.3e-06	0.00016	23.7	1.2	1	23	526	548	526	548	0.98
13	16	0.63	76	5.8	0.3	3	23	556	576	554	576	0.96
14	16	0.00045	0.055	15.7	2.9	1	20	582	601	582	604	0.94
15	16	1.4e-07	1.7e-05	26.8	0.2	1	23	610	632	610	632	0.98
16	16	3.3e-05	0.004	19.3	2.3	1	23	638	660	638	660	0.96

Sequence Information

Coding Sequence: atgaGTAATTTTGATGTTACGCCTGCGGATGAACTCAGAAAATTCCCAGCCAAATCATCAGATGCACCTGAGAATCCAACCACCACATCAAGTCGTTCGTCATTAGCTGATGATTGCCAACAAAATTGTCCAATGACATCAGGAGCTGGAGAGAGCAAGCCAGTGCTGGAACTACTACCAGTCAAGGTTGAGCAGGAGAGCTATGCTGTGAGTGACAACAATCAGTCATGTAACAGTGAGGGCATGTTTTGTTGTCCACTGTGCTGCAATGGAAATATGGCTGTCCAGAACACTGCACTGGATATCAATGATGCTCTCGACTTGGGGCTGCTAGGACCCACTCAGTCTGGTGTATATCAGCGGCCAGCTCTGGATGGACATATTGTCAGACTACAGACTAGCATGAATGATGATAGCACCACTGTGTGGGAGGAAGATATTCCTGTTGTTAATGCAGACCTGACAACAATCACACAAGATGGCACTACTATGCAAGTTGCTGAAGGAATCTACAATTTACCAGTTGCAGATAATATGAGCATGTTTGATGGAGGAGCAAGTCTTCCTAGTTGTCGACTTTGTGGCCAGGTATTTCCAAACATTGAACTTTGCTTGGACCATGCAAAGGTGCACATGGAATCCGACTTGTATCCCTGTAGTTTGTGTGAACTTTGTTTCACTAGTGAGATATGTCTCATCAGTCACTGTGAGGAGCACAAGGCAGCAGAAATACAACTGCGACCCAAGACCACAAAGCGTTTGGTGTGTTCCACTTGTGGGAGAAGATTTAACAACCCAAAAACTCTGGCTGGACACTCTTGTTTTAGCATGGCACGCCCTTACAAATGTCTGGACTGTGGCAAGTTCTTTCAAACTGAAGCTAGGCTAATGTTCCACCAAAAGTTTCATCTGGGTGGCAACCCTGTAGAATGTGAGCATTGTGGTAAGGAGTTTACTAGGGAAAATAACTTGTTTGATCATGTTAGGTTGGTACACATGGGCGAAAAGGCACACCGCTGTGAACAGTGTGGTAAGACATTTCAGCTGAAGGCCCGTTTAGTGGCACATCTGCGCGTTCATTCTGGGGAACGCCCATTTGTATGTGACATTTGTGGTGGAAAGTTCTACGACAATGCAACATTAAAGGGACACCGTGTCACGCACTTGGATGTGAAACCTTTCCAATGTGACAAATGTGGTCGTTGTTTTGCACGTAAGACATTATTCAAACAGCATGCACTCGCACATTCTTCAGAAGAACCAAAAACACCAAAAATTTACAGCTGCAAACTGTGCAACAGTGATGAGACATATCCCAcatatgcaaaattaatggatcacaGAAAGTTGCTGCATCCCAATGTGAAACTATTTGAGGATGAAGAAACCATCCACTCATCAAAACCATTCAAATGTGAAGATTGTGGAAAGTCATTTGCATATCGAGTGACACTGTTAGCACACCAGCGAAATCACACAGGCGAGCTTCCTTTCGCATGTGATTATTGTGAAAAACGGTTCTCACAGAAGAGATCATTGGTGTTACATCACCGTACTCATACAGGTGAAAAGCCATTTGAATGTGATGTTTGTGGAAAACGGTTTGTACAGAGTGCCCACTTGTATTCACATCTACGCCTGCATACAGGGGAAAAGCCCTATGGATGTGATGTATGTGGTGATAAGTTTAGGCTAAAAGATGTACGAGATGCACATATGCGGAAGCATACAGGAGAGCGACCATTCAAGTGCAATGTTTGCAGCAAGGCATTTCGTACTAGTCACTCCTATTACCAGCATATGTGGATCCATCAAGGCAAGAAACCGTATCCTTGTGGATATTGTGGCAAGGCATTCCGCCGATCAAATGGACTAAAAATTCACATTCGCATTCATACCGGGGAGAAGCCACACTCGTGTGATGTATGTGGACGCAGCTTTGCTCAGAAGCAGGACATGAAAAAGCATAGAAACTTGCATGTGATAGGTAAACTTTAA
Protein Sequence: MSNFDVTPADELRKFPAKSSDAPENPTTTSSRSSLADDCQQNCPMTSGAGESKPVLELLPVKVEQESYAVSDNNQSCNSEGMFCCPLCCNGNMAVQNTALDINDALDLGLLGPTQSGVYQRPALDGHIVRLQTSMNDDSTTVWEEDIPVVNADLTTITQDGTTMQVAEGIYNLPVADNMSMFDGGASLPSCRLCGQVFPNIELCLDHAKVHMESDLYPCSLCELCFTSEICLISHCEEHKAAEIQLRPKTTKRLVCSTCGRRFNNPKTLAGHSCFSMARPYKCLDCGKFFQTEARLMFHQKFHLGGNPVECEHCGKEFTRENNLFDHVRLVHMGEKAHRCEQCGKTFQLKARLVAHLRVHSGERPFVCDICGGKFYDNATLKGHRVTHLDVKPFQCDKCGRCFARKTLFKQHALAHSSEEPKTPKIYSCKLCNSDETYPTYAKLMDHRKLLHPNVKLFEDEETIHSSKPFKCEDCGKSFAYRVTLLAHQRNHTGELPFACDYCEKRFSQKRSLVLHHRTHTGEKPFECDVCGKRFVQSAHLYSHLRLHTGEKPYGCDVCGDKFRLKDVRDAHMRKHTGERPFKCNVCSKAFRTSHSYYQHMWIHQGKKPYPCGYCGKAFRRSNGLKIHIRIHTGEKPHSCDVCGRSFAQKQDMKKHRNLHVIGKL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00821178;
90% Identity: -
80% Identity: -