Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.001 1.7 10.5 0.5 12 39 102 126 94 133 0.86

2 9 0.037 64 5.5 1.3 17 43 135 163 128 164 0.79

3 9 0.00089 1.5 10.7 4.1 6 40 153 183 148 192 0.85

4 9 3e-05 0.051 15.4 1.4 14 40 188 216 180 222 0.74

5 9 0.51 8.8e+02 1.8 2.4 18 39 220 238 212 248 0.79

6 9 0.016 27 6.7 3.4 17 44 247 276 239 276 0.88

7 9 0.00096 1.6 10.6 1.7 15 39 273 294 268 304 0.82

8 9 0.12 2.1e+02 3.8 1.9 18 38 304 321 295 332 0.88

9 9 0.096 1.7e+02 4.2 3.7 4 39 319 350 316 360 0.73

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.001	1.7	10.5	0.5	12	39	102	126	94	133	0.86
2	9	0.037	64	5.5	1.3	17	43	135	163	128	164	0.79
3	9	0.00089	1.5	10.7	4.1	6	40	153	183	148	192	0.85
4	9	3e-05	0.051	15.4	1.4	14	40	188	216	180	222	0.74
5	9	0.51	8.8e+02	1.8	2.4	18	39	220	238	212	248	0.79
6	9	0.016	27	6.7	3.4	17	44	247	276	239	276	0.88
7	9	0.00096	1.6	10.6	1.7	15	39	273	294	268	304	0.82
8	9	0.12	2.1e+02	3.8	1.9	18	38	304	321	295	332	0.88
9	9	0.096	1.7e+02	4.2	3.7	4	39	319	350	316	360	0.73

Coding Sequence: ATGGATCCCAAGCTAAAAATTAAGGAAGAAGTATTAAACCATGATTCATATTCACATGATTTGAAATTGGAAATTAAAGAGGAAACTTCTTGTAATGTTGAATGTGACACTATGGTGGAAAATGAAAAGTCTCAGAGGGACATAAATGAATGCAATGACTATGAGAAGGTAAACATCAAACTAGAGATAAAGGAAGAACTACTGGACCCTAGTGCATATTCACTTGAACTGAGATCAAAAACTTTCAAAGAAAGTTTATATAGTGGTGCTCATGACACTGCATTGGAGAATGAGGTAAATATCAGGATTAAAAATTCACCGAAGTGTGAAATCTGTGGGAAGAGCTTTTACAAGGCATCTAATTTGAGACAACATCTTTTAATCCATGAAGGCaagaagccatataaatgtgaagtttgtggtaagagctttaccTATGCTTCTGTCTTGAGGACACACATTTTAATTCATGATGACAAGAAGAGACATAgatgtgaaatttgtgagaagagctttactcagtCATCTAGTTTAAGGAAACATCTTCGTATTCATCAGGGCAAGAAGccccataaatgtgaattttgtggaaaGGACTTTGCCCAAACATCTAATTTGAAacaacatcttttaattcatgaaggtaagaagcctcataaatgtgaagtttgtgagctAAGCTTTACACAGATATCTACTTTGAGGAGACATATTTTGACTCATCAGGGGAAGAAGCTACATAAGTGTGAAGTCTGTGGGTTGAATTTCACGCGGACTTCCAGCTTGAGGAAACATATATTGTCTCATGAGGGTAGAAAGGcccataaatgtgaattttgtagcaagagctttacccagaaatCTAATCTAAAacaacatcttttaattcatgagggcaagaagccacataaatgtgaaatttgtgaacTGAGCTTTACACAAACATCTACTTTGAAGAGACATGCTTTGactcatgagggcaagaagccacacaAGTGTGAAGTTTGCGGGTTGAGCTTTACACAGACATCTACTTTGAGGAGACATGTTTTGACTCATGAGTATAAGAAGTTCCATAACTGA
Protein Sequence: MDPKLKIKEEVLNHDSYSHDLKLEIKEETSCNVECDTMVENEKSQRDINECNDYEKVNIKLEIKEELLDPSAYSLELRSKTFKESLYSGAHDTALENEVNIRIKNSPKCEICGKSFYKASNLRQHLLIHEGKKPYKCEVCGKSFTYASVLRTHILIHDDKKRHRCEICEKSFTQSSSLRKHLRIHQGKKPHKCEFCGKDFAQTSNLKQHLLIHEGKKPHKCEVCELSFTQISTLRRHILTHQGKKLHKCEVCGLNFTRTSSLRKHILSHEGRKAHKCEFCSKSFTQKSNLKQHLLIHEGKKPHKCEICELSFTQTSTLKRHALTHEGKKPHKCEVCGLSFTQTSTLRRHVLTHEYKKFHN

Sequence clustering based on sequence similarity using MMseqs2