Basic Information

Gene Symbol
-
Assembly
GCA_030762175.1
Location
CM060831.1:81832636-81835380[-]

Transcription Factor Domain

TF Family
zf-BED
Domain
zf-BED domain
PFAM
PF02892
TF Group
Zinc-Coordinating Group
Description
The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.023 39 6.2 1.5 28 39 39 54 26 64 0.69
2 10 0.0012 2 10.3 2.2 18 39 64 82 55 92 0.83
3 10 7.1e-05 0.12 14.2 2.0 18 39 92 110 83 120 0.84
4 10 3.4e-05 0.059 15.2 3.5 13 44 115 148 111 148 0.85
5 10 0.12 2e+02 3.9 3.6 16 39 146 166 140 175 0.81
6 10 0.006 10 8.0 8.2 18 40 176 200 169 225 0.87
7 10 0.11 1.8e+02 4.0 4.5 17 39 231 250 220 260 0.80
8 10 0.054 93 5.0 4.5 4 39 247 278 245 288 0.76
9 10 0.0092 16 7.4 1.1 18 39 288 306 279 312 0.89
10 10 0.0084 14 7.6 0.1 17 39 315 334 307 337 0.85

Sequence Information

Coding Sequence
ATGTGCAATGCGGTAAAAGAAAGTCATGAAGAAGTATGTCCATCCCCTCCCGTCTGCGTGAACTGCGGCGGAGACCATCCTGCTTCGTGTCCTGACTGTCCTGAGAAGAACTCTGTACACAGGAAGAGCTTTACCAAGACATCTAATTTAaggcaacatcttttgattcatgagggtaagaaaccacataaatgtgaagtttgtggcaagagTTTTAGGCGGACATCTAATTTAAAGAtgcatcttttgatacatgagggtaagaaaccacataaatgtgaagtttgtggtaagagctttagGCGGACATCTAATTtaaagagacatcttttgattcatgaggataaCAAACCCCATAAATGTGAATATTGTGGGAATAGCTTTACCCGGACATCTAcgttaaggaaacatcttttgattcattggattaagaaacaacataaatgtaaagtttgtgggaagagctttatccgTAAGTCTTatttaaggacacatcttttgaCTCATGAGGGTaacaaaccacataaatgtgaatattGTGGGAATAGCTTTACCCGGACATCtactttaaggaaacatcttttgattcatggggttaagaaaccacataaatgtgaagtttgtgggaataGCTTTACTCAAACATTTACTTTAAGGAGACATcgtttgattcatgagggtaagaaaccacataaatgtgtagtttgtggtaagagctttgTGCAGTCATGTAATTtaaagagacatcttttgattcatgagggtaagaagcctcataaatgtgaagtttgtggtaagagctttatGGATACATCTCATTTAAAGAGACATCTTTTgtttcatgaaggtaagaaaccacataaatgtgaagtttgtgggaagagctttaccttGATATCtactttaaggagacatcttttgattcatgagggtaagaaaccacttaaatgtgaagtttgtgggaaggtCTTTACCCAAGCATCTAATTTAACGGTACATCTTTTGATCCATTAG
Protein Sequence
MCNAVKESHEEVCPSPPVCVNCGGDHPASCPDCPEKNSVHRKSFTKTSNLRQHLLIHEGKKPHKCEVCGKSFRRTSNLKMHLLIHEGKKPHKCEVCGKSFRRTSNLKRHLLIHEDNKPHKCEYCGNSFTRTSTLRKHLLIHWIKKQHKCKVCGKSFIRKSYLRTHLLTHEGNKPHKCEYCGNSFTRTSTLRKHLLIHGVKKPHKCEVCGNSFTQTFTLRRHRLIHEGKKPHKCVVCGKSFVQSCNLKRHLLIHEGKKPHKCEVCGKSFMDTSHLKRHLLFHEGKKPHKCEVCGKSFTLISTLRRHLLIHEGKKPLKCEVCGKVFTQASNLTVHLLIH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00995937; iTF_00995505;
90% Identity
iTF_00995937; iTF_00995505;
80% Identity
iTF_00995937; iTF_00995505;