Mvio022560.1
Basic Information
- Insect
- Metallyticus violacea
- Gene Symbol
- lrrfip2
- Assembly
- GCA_030762175.1
- Location
- CM060836.1:25020743-25069996[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.4e-103 2.2e-98 331.1 34.5 1 270 241 518 241 536 0.89
Sequence Information
- Coding Sequence
- ATGGGGAACTCTGCAGGAAACGAGGAGGTGAGGCACGAGACAGTACAAAACGGTGGGGCAATGAGTGTTCAAGGCTTGACCGGTGACGGGAACAATGACGACGGAGTTAATGGAACTGAGTTCTGTAGTCAGAGTCAAGTTGGTAATGGTGATGAAGCTGGTTGTAGTGATGAGGAGAAACTTGACGCTGACACTGTAGGTGAAGACGGCAGTGTCCATGTTGTGGATGGTAGTAAAACATGTGCcaggaaaaaaacaaacagtGTGTCCAGGACCTCTGCCGAAGAGCTCGAGGACGATGATTTCATCTTCGATTACCTGGACAAAAGTAACGACGAGcCTTCCGTTCGCTATTCAGAGTGCATGAGATTTAAGTTGTGCGGTGGTTATAAAGAGACAAGAACACTCGCCCCTCTCGCTCGCTCTTGGGCATCACTGAGcatGCTCTCGCTGTGGAGCTCTCATAGCATTGTAGTCGATCCTGAGCTCTCGTTCTATGAACCTAAACAAAAGCTGCGCGTGTACCTTGCCATTATACCGGCGATGGTTCTGCACGACTGTGAAATTTGGGGAGCCGCGACTCTGACCACGATCTGCAAAATCCAGATGCTGTTGAACCGCGCGCTAAGGATTATGTACGGCACCGACCGCGCTTCCCAGCCCACATCCTGCACACCCATTCCAACGTTTCGTTCGTACGGGAGAGAGCTCGGGCGCTCCgCAGAAGCTCGGCTGGCTGCTCGTCGACAAGCCAGAGCAGAGGCAAGAGAAATCCGTATGCGAGAGTTAGAACGTCAGCAAAAGGAGAATGAGGAAAACCACGATTCTGTGTATGATATGTACAGTAGAGAAACTCCAAGCCGTACTACAAGAGTGGCTTCCACCATGAGGACTGCATCACATACTAGTACCAATAGCTACCACTCAAGTCGCCGCAGTTCTGAAGACTCCCTGGAAGAGGGTATCAGCCTTAGGGATGTACGACAAGAGCTGAAGGAGGTGGAGGAGAAATTCCGCAAAGCAATGATTCAGAATGCCCAACTAGACAACGAAAAATCCTCACTCACATACCAGGTGGAACTGCTCAAAGATAGGCTGGAAGACCTTGAGGAGTCTCATGCACAACTCCAGCGAGAACACAGGGAGAAGTGCAGAGAGCATGATCAGCTTAAGCGAGCAGCAGCAAAACTGAAAGAGGACCTTGATATCTATAAGGCACAACTAGAAGAAAGAGATAGGCTCATACAGgaGCATGGTCTTATGATAGTAGGTGATGAGCAGGCTTCCAGTGAAGAAGAGAATGGAAATAAAGATGGTGTTAATATCCCAACAAAGAAAACACCACATAGGGCATTAGTGTCTATAGAATCTGCTGAATTGCTTCAGAGTGCTGGTGAAGGTTCATTAGATGTAAGACTGCGAAGGTTTGCAGAAGAACGAAACGAATTGTTAGACCAGGTACGCCATCTTAAGCTGGAGCTGGAGGAAGAGCGAAGTAGGCATAAGTCACAACACCATCGTCTTTCTTCTAGTACCTCTGCCTCCACAGCCAGCCTTAACGGTCCTGATACTGATCTTGTAGATTTACAGAGTAAGTATACAGATACTACCATAAAGTTGCTGTAA
- Protein Sequence
- MGNSAGNEEVRHETVQNGGAMSVQGLTGDGNNDDGVNGTEFCSQSQVGNGDEAGCSDEEKLDADTVGEDGSVHVVDGSKTCARKKTNSVSRTSAEELEDDDFIFDYLDKSNDEPSVRYSECMRFKLCGGYKETRTLAPLARSWASLSMLSLWSSHSIVVDPELSFYEPKQKLRVYLAIIPAMVLHDCEIWGAATLTTICKIQMLLNRALRIMYGTDRASQPTSCTPIPTFRSYGRELGRSAEARLAARRQARAEAREIRMRELERQQKENEENHDSVYDMYSRETPSRTTRVASTMRTASHTSTNSYHSSRRSSEDSLEEGISLRDVRQELKEVEEKFRKAMIQNAQLDNEKSSLTYQVELLKDRLEDLEESHAQLQREHREKCREHDQLKRAAAKLKEDLDIYKAQLEERDRLIQEHGLMIVGDEQASSEEENGNKDGVNIPTKKTPHRALVSIESAELLQSAGEGSLDVRLRRFAEERNELLDQVRHLKLELEEERSRHKSQHHRLSSSTSASTASLNGPDTDLVDLQSKYTDTTIKLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -