Mita019389.1
Basic Information
- Insect
- Metalampra italica
- Gene Symbol
- -
- Assembly
- GCA_949699065.1
- Location
- OX452998.1:706213-714837[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.00083 0.048 14.5 1.6 1 23 163 186 163 186 0.98 2 16 0.66 38 5.3 0.1 1 12 220 231 220 238 0.83 3 16 0.15 8.6 7.4 5.1 1 23 250 272 250 272 0.98 4 16 2.8e-05 0.0016 19.1 0.2 2 23 277 299 276 299 0.95 5 16 3e-05 0.0017 19.0 1.6 1 23 306 329 306 329 0.98 6 16 1.1 66 4.6 0.9 6 23 340 357 336 357 0.91 7 16 0.69 39 5.3 0.6 6 23 385 402 381 402 0.91 8 16 0.06 3.5 8.6 0.8 3 23 426 446 425 446 0.96 9 16 0.06 3.5 8.6 0.8 3 23 470 490 469 490 0.96 10 16 0.69 39 5.3 0.6 6 23 518 535 514 535 0.91 11 16 0.06 3.5 8.6 0.8 3 23 559 579 558 579 0.96 12 16 0.69 39 5.3 0.6 6 23 613 630 609 630 0.91 13 16 0.00047 0.027 15.2 0.9 1 23 641 664 641 664 0.95 14 16 0.41 23 6.0 1.9 1 23 670 693 670 693 0.91 15 16 3.1e-05 0.0018 18.9 1.0 3 23 704 724 703 724 0.98 16 16 0.028 1.6 9.7 0.3 2 23 731 753 730 753 0.94
Sequence Information
- Coding Sequence
- ATGCCAGCTAATACAAAGTTCCAAAACATCCAACTGACCCCCATAAAGATGCTATCGGTGTCTCCAATCGATATGAAAACATCCCTGGTATCCGCCCTGCATACACCATCACATCTCATGCGGCCACTTCAGCAACACGTCAACTTGGAATCCAATAACAATGAGACCAACATTTCCCTAAGTAGTGACCATTACTATCCAAAACCAATAACTGTTAGCGTCAAATCGGAAACAGCCAATCAGGCAGAGTGCGAAACTACAAgagatataaaaatagaacTCGAGAGCTGTTCTGATGTAGAAATAGAAGTACCATTAATAGAATTCAAAGGGGAAACATCTATACAGAAACTACCAAAAGATATTACGATCTATCCCGTGCATCAAAGGTACGAGGGGAAAGTGAAAATTGTAACGCTGACTAAGGAAGAGCTGATGTTAGAGAGAGACAAGGAGAGGCTGGGGGAAAAGTATTTGAAGCTTCCTTATAAATGTGAGACTTGTGTAACAGCGTTTGACCACGAAATTCTGTTAAAAAACCATATGATGAAACGACATACTTTGAAACCCGGCACAAGTGTCTGTGAGATTTGCAAGTGCGTGTTTGGATCCAGCCCCTACGCGTGTAAGGAACACATCAAGCGGCATTTTGCGAGGTATGATTGCTTGGAGTGCGGCAAGCGGTACAACAGCCTGCTGGGCGCCACGACGCACTGCGCCCAGGTCCACGGCAGCATCGCCACCAGCTACCAGTGCCAAGAGTGCGACTTCACCACGCAACGATACCGGCAGTACCGCTACCACAAACAGAAGCACCGGCAGCGCGTGCCGTGCCCGCAGTGCGACAAGAAGTTCGTCTCCACCTCCGGCCTCAAGACGCACTTGTTAGTGACCCATAGGGCGTCCGACCGCGTGTACACGTGCGAGAGCTGCGGCAAGGAGTTCCGCCATAAGTCCGCCGCGAGCAATCACCAGCGGTCCGCGCACAGCGGCCTTGGCACCGCGTACTGCGCGCCGTGCAACGCGCACTTCCGCACCGAGCAGGGGCTCTCCTACCACCTCAAGTATCACTCCAAGCATCTAGACGACAGCGCCAAGAGCCAGCACCAACGGTCCGCGCACAGCGGCCTCGGCACCGCGTACTGCGCGCCGTGCGACGCGCACTTCCGCACCGAGCAGGGGCTCTCCTACCACCTCAAGTATCACTCCAAGCATCTAGACGACAGCGCCAAGAGAGGTGAGCACTCACCAAGCCAGCACCAACGGTCTGCGTACTGCGCGCGGTGCAACGCGTACTTCCGCACCCAGCAGGGGCTCTCCTACCACCTCAAGTATCACTCCAAGCATCTAGACGACATCGCCAAGAGAGGTGAGCACTCACCAAGCCAGCACCAACGGTCTGCGTACTGCGCGCGGTGCAACGCGTACTTCCGCACCCAGCAGGGGCTCTCCTACCACCTCAAGTATCACTCCAAGCATCTAGACGACATCGCCAAGAGCCAGCACCAGCGGTCCGCGCACAGCGGCCTCGGCACCGCGTACTGCGCGCCGTGCGACGCGCACTTCCGCACCGAGCAGGGGCTCTCCTACCACCTCAAGTATCACTCCAAGCATCTAGACGACAGCGCCAAGAGAGGTGAGCACTCACCAAGCCAGCACCAACGGTCTGCGTACTGCGCGCGGTGCAACGCGTACTTCCGCACCCAGCAGGGGCTCTCCTACCACCTCAAGTATCACTCCAAGCATCTAGACGACATCGCCAAGAGAGGTGAGCACTCACCAAGCCAGCACCAGCGGTCCGCGCACAGCGGCCTCGGCACCGCGTACTGCGCGCCGTGCGACGCGCACTTCCGCACCGAGCAGGGGCTCTCCTACCACCTCAAGTATCACTCCAAGCATCTAGACGACATCGCCAAGAGGTTCGAGTGCGACTACTGCGGCAAGAGGTACCCGCTCAAGTGCAGCCTCCTGGACCACATCAACGGCATGCACCTCAAGCGGTACTGGTACTCCTGCAACCAGTGCGACGAGAAGTTCCTGTGGAAAACGTATCTGAGGAGGCACAAGGTCACGACGCACAAGAAGGGCGGAGCGCCCCGAGACAAGATCTGCCAGCACTGCGGCAAGGGCTTCACTACCAACCGCATCCTGGAAGCGCACATCCGCACGCACACGGGCGAGCGGCCGCTGGAGTGCGCGCACTGCCCCGCCACCTTCGCGCACCCCGCCGCCAGGTACAACCACATCAAGCTGGTTCACAAACGCAAGAGACCCGCCGCCGTGTGA
- Protein Sequence
- MPANTKFQNIQLTPIKMLSVSPIDMKTSLVSALHTPSHLMRPLQQHVNLESNNNETNISLSSDHYYPKPITVSVKSETANQAECETTRDIKIELESCSDVEIEVPLIEFKGETSIQKLPKDITIYPVHQRYEGKVKIVTLTKEELMLERDKERLGEKYLKLPYKCETCVTAFDHEILLKNHMMKRHTLKPGTSVCEICKCVFGSSPYACKEHIKRHFARYDCLECGKRYNSLLGATTHCAQVHGSIATSYQCQECDFTTQRYRQYRYHKQKHRQRVPCPQCDKKFVSTSGLKTHLLVTHRASDRVYTCESCGKEFRHKSAASNHQRSAHSGLGTAYCAPCNAHFRTEQGLSYHLKYHSKHLDDSAKSQHQRSAHSGLGTAYCAPCDAHFRTEQGLSYHLKYHSKHLDDSAKRGEHSPSQHQRSAYCARCNAYFRTQQGLSYHLKYHSKHLDDIAKRGEHSPSQHQRSAYCARCNAYFRTQQGLSYHLKYHSKHLDDIAKSQHQRSAHSGLGTAYCAPCDAHFRTEQGLSYHLKYHSKHLDDSAKRGEHSPSQHQRSAYCARCNAYFRTQQGLSYHLKYHSKHLDDIAKRGEHSPSQHQRSAHSGLGTAYCAPCDAHFRTEQGLSYHLKYHSKHLDDIAKRFECDYCGKRYPLKCSLLDHINGMHLKRYWYSCNQCDEKFLWKTYLRRHKVTTHKKGGAPRDKICQHCGKGFTTNRILEAHIRTHTGERPLECAHCPATFAHPAARYNHIKLVHKRKRPAAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00994375;
- 90% Identity
- iTF_00994375;
- 80% Identity
- iTF_00994375;