Mita006632.1
Basic Information
- Insect
- Metalampra italica
- Gene Symbol
- -
- Assembly
- GCA_949699065.1
- Location
- OX452977.1:1323531-1338109[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.041 2.4 9.1 2.2 3 23 37 57 35 57 0.96 2 22 0.0022 0.13 13.1 2.9 3 23 116 136 115 136 0.98 3 22 0.00045 0.026 15.3 2.4 1 23 174 197 174 197 0.92 4 22 0.11 6.1 7.8 0.3 3 23 238 258 237 258 0.94 5 22 2.7 1.6e+02 3.4 0.2 3 23 333 353 331 353 0.96 6 22 4.2 2.4e+02 2.8 4.8 1 19 362 380 362 384 0.90 7 22 0.086 4.9 8.1 0.3 3 23 427 447 426 447 0.98 8 22 0.096 5.5 8.0 0.2 3 23 504 524 502 524 0.96 9 22 4.8 2.7e+02 2.6 1.5 1 19 533 551 533 553 0.96 10 22 0.00054 0.031 15.0 1.7 3 23 564 585 562 585 0.97 11 22 0.034 1.9 9.4 0.4 3 23 633 653 632 653 0.98 12 22 0.00015 0.0087 16.8 2.5 1 23 691 714 691 714 0.93 13 22 0.0072 0.42 11.5 2.8 1 23 716 740 716 740 0.96 14 22 0.21 12 6.9 1.1 1 23 776 797 776 797 0.95 15 22 2.9e-05 0.0017 19.0 0.2 1 23 885 908 885 908 0.92 16 22 0.15 8.8 7.3 0.1 3 23 919 940 917 940 0.94 17 22 0.00082 0.047 14.5 0.3 2 23 946 969 945 969 0.92 18 22 0.9 51 4.9 1.6 3 23 977 997 977 997 0.97 19 22 0.0034 0.19 12.5 0.1 1 23 1002 1024 1002 1024 0.96 20 22 0.0065 0.37 11.7 1.0 1 23 1030 1052 1030 1052 0.97 21 22 1.5e-05 0.00083 20.0 1.4 1 23 1058 1080 1058 1080 0.98 22 22 0.29 17 6.4 5.0 1 23 1086 1109 1086 1109 0.98
Sequence Information
- Coding Sequence
- ATGGCTTCATCCAAACACTTTGACGATGCACAAACCAGAGACAACGGCGCGCCCGGGCCGCGCCAAAACCGCAAACCGACTACGATAGACCTGATTGGAGGCATATTCTGCAACATCTGTGAGCACACATACAGTAACAAGACAAAGTACGATGCACATTACAAACTACACAACACCGGCAGTTCCGAGATAGAGTATGCATGTGTTGTTTGCCGCCTGGTGGTGGTGCACTACCGCAACTTCTTAGTGCACTGCTACCGTCGTCATGTACACAAAGACAAATTCAGTTCCACCTCACACCGACCTACGAAACCCACAACCATCGACTTAATCGGTGGCATGCTATGCCACATTTGTAAACTGACGTTCAGCAACAAGAAGGAGTACGACAAACACTACGCAACACACAACACCGGGGGAGCAGAGATAGAGTATGAATGTGTCGTTTGTCACAAAGTGCTGGCCGGGTTCATCAGCTTTCGGAATCATTGCTCAGACCGTCACGTGCAAAAAGACAAATTCAAATGCAAATACTGTGATAAAAAATTCGTCAAACAGTTTTTCCTCTACAAACATGTCATCGCTGTGCACATGCCTAAATACAACAACAAAGACAACGGCACTAAACAGCCACCTCATACATTCTTGGACCACGCAGAAGAGAGCAGTTCCGGCAAACCAACCACAATCGACTTAGTTGGGGGCATTTTGTGTAACGTCTGCGAGACGACTTTCAACAACAAGAAGGGGTACGACGAGCACTACGCGGCGCACAACACCGGCAACGCCGAGATAGACTACCAATGCGTCGTGTGCCACACAGTGCTGGCGGGGTACATCAGCTTTTGGAATCATTGCTACGAGCAGCATGTGCGGAAAGAAAAAATCAGACCACAACACGCATACCTGGAGCAAGCGGAAGAGAATGGCGCGGGCGCAACCAAACCGTCCTCAAACCCGAAACCCACTACCATCGACTTGATCGGCGGTATATTCTGTCGCATCTGTGAACTGACGCTCGGCAACAAGAAGGAGTACGACGAGCACTACGCGACGCACAAGGCCTGGAGCGCCGACGTCGAGTACACGTGTGTGCTCTGCCACAAAGTCGCCTCGGACTACCGCAGCTTTCGGCAGCACTGCGACCGCCACCTACAAAAAGACAAGTTCAGGCGACCTCTTACACACTTGGAGCAAACAGAAGCTAACGACTCGGGCACCCCCGAGCCACCGAAAACCCGTAGACCCACCACCATCGACTTAGTCGGCGGCATATTGTGTGTCATCTGTCAGCTGACATTCGGCAACAAGATGGAGTACGACAAACACTACGCGACACACAACACCGGCGGAGCAGAGATAGAGTACGCGTGTATTATTTGCCACAAAGTCATAGTCGACTATCGCACCTTTCGCGGCCACTGCTACGACAGACATTTGAAGAAGTTCAGGTTAAGCTCGCAACGTCCCAAGGTGAAACACACCATAGACCTGATCGGAGGCATATTCTGTAAAGTCTGTCAACTGACATTCGGCAACAAGATCGAGTACGATGAACACTACGCGACACACGACGCCGGCAGCGCTGAGATCAAGTACGCGTGCGTGGTGTGCCACAAGGCAGTAGCAGGGTACACTAGCTTCCGACGTCACTGCTACGATCAGCATTTACAAATAGCCAAATTCGGATGCAAGTACTGCGACAAAACATTCATGAAACAGATGTACCTCGACAAGCATATCATGCGTAGGCATTCATTCAACAGCTCTGAAGATAACCGCACAAATACACCACCGCACACGCAACTGGACCAAGCAGAAATTCACGACCCAGGCGCGACTGGACCGCCGAAACCCCGTAAACCCACCACCATCGACTTAGTCGGCGGCATATTGTGTGTCATCTGTCAGCTGACATTCGGCAACAAGAAGGAGTACGACAAACACTACGCGACACACAACACCGGCGGAGCGGAGACAGAGTACGCGTGTGTCGTTTGTCGCAAATCGTTAGCAGGCTATAACAGTTTCCGTACGCACTGCTACGACCAGCACGTGCAAAAAGAtaagtttaaGTGCAAGCACTGTGACAAAACATTCAGCAAACAAAGCATACTCAACGAGCATATCACTGCCATGCATATGTACAAATGTACTAAGGACGACTGCACCAAACAattCACAACCGAAAAAGATCTCCACGTACACGAATTCATTCACAAGAAAGAGCGCAACAAACCCCCGTACCAGTGCCGCACATGCTACGAGCAGATAGACAGCATCGACGCGTGCGAAGAGCACATCGACCAACACTGCTCGTTCAATTACTCCTGCCCCATCTGCAACGAGCACACAACTAAAACCAACGCCGCCAATCACCTCACGAAGCACTTCGGTGACGTACTTAACGAGGGAGACAGTGAAGACTGCGAGCTGCCCGAAACATCCGAAGACAGCTCCATAAACGTCATCGGGGGCATTTTCTGCTGTTACTGCGAGAACATCTACAAAAACAGATTGGAGTACGATGTCCATTTTACGGCGGAGCACGAGGAGAAAGCCAAGGTGTACTGCTGCATCATCTGTAAGAAGCAATTCGAAACGTATTCCAAGTTCGGCTGCCATTGCTACGACCACATCTCTAAGGCCAGGTTTGAATGCGACGAGTGCGACAAGTCGTTCCCGCGGCTGTCCCTGCTCGTGCAGCACACTGAGGCGTTCcacgcgcgcgcgggcgcTCCGCCCTCGTTCGGGTGCGCGCGCTGCCCGCGCGCATACTCCTCGCGCAAGCGGCTGgtcgcgcacgcgcgcgccgcgcacgaCGTGCTGCACCACGCGTGCACAGAGCCCGGATGCGACACCACATTCGAAACGCCGAAAGACCTGATCCTCCACCAGAAGCAGCACAAGTCGACCCTCGACAATTGGTGCCGCCAGTGCGGCCTGCAGTTCACCACCCTCGCCTCCTGCGAGAAGCACCTCGACGTCCACAAGGAGAAGCTGTTCGCGTGCCCCGTGTGCGGCCGGCGGTACGGCGAGAAGTATCTCATGATGAACCACATCTCCCAGCACTTCGAGTCTGTCCTGCACATGTGCAAGGTCTGCGGGAAGATATACGACGCGAAGCGCCGCCTCATCGAGCACGTGAAGACCCACTCCACAGCCAAAACGTATGAATGCGAGTACTGCGGAAAGGGATTCGTGAAGACCAATCATTTACAGCAGCATCTCAGCATCCACACAGGGATGAAGCCGTTCAAATGCCTCGCCTGCCCCAAAACCTTCGGGTCGTACCCGAACTGCCACAAGCACATGCGTAAAATGCACAATATCGACACTAAAATGCTTAAGAAATCAGCGAATAACAGTCCGATGAGCAATGAGAGATCTCCGTTCACGATGATCCAGCCGGACTCGGTGGCGTCGGAGAGCTTGATGGACACCGATGACAGCACGATGGACTCCGAGAGTATCGACAACATCGTCATACAGAAAGAATCGCCCATATTCGATGTGGACATGAACCCAGTGGACATGGCCGCTGCGTTGGCCAACGATCTGCCCGACAATATAGTTGCATTTGTTACTGAAGCCCAAGAGGCGATGTCTGCGCCGCCTCCCCCCGCCGCGCAGCCCGTCCCCGCGGCCGCCTGCGCCCCCGTCCCCGAGTTCAGCGACGACGAGGACCTGGACCTGGGCATCGGCGAGCTGATCGACCTCGACGACCACCTCATCCCCGGCATCGACCCCCGCCTCATCACCTCCCCCGCGCACGCGCTGCACTACTTCGACAGCTTCGACCAGAGTATCACCGACCGGAGCAAGTGGGAGCCCCCAGTCATCACGAAGCTCTTCGACAACTTCTACGGGGAGATCCCCGACCTGGGCGCGAGCCGGATGCCCGTGATGAGCACGAATTATTTCTGA
- Protein Sequence
- MASSKHFDDAQTRDNGAPGPRQNRKPTTIDLIGGIFCNICEHTYSNKTKYDAHYKLHNTGSSEIEYACVVCRLVVVHYRNFLVHCYRRHVHKDKFSSTSHRPTKPTTIDLIGGMLCHICKLTFSNKKEYDKHYATHNTGGAEIEYECVVCHKVLAGFISFRNHCSDRHVQKDKFKCKYCDKKFVKQFFLYKHVIAVHMPKYNNKDNGTKQPPHTFLDHAEESSSGKPTTIDLVGGILCNVCETTFNNKKGYDEHYAAHNTGNAEIDYQCVVCHTVLAGYISFWNHCYEQHVRKEKIRPQHAYLEQAEENGAGATKPSSNPKPTTIDLIGGIFCRICELTLGNKKEYDEHYATHKAWSADVEYTCVLCHKVASDYRSFRQHCDRHLQKDKFRRPLTHLEQTEANDSGTPEPPKTRRPTTIDLVGGILCVICQLTFGNKMEYDKHYATHNTGGAEIEYACIICHKVIVDYRTFRGHCYDRHLKKFRLSSQRPKVKHTIDLIGGIFCKVCQLTFGNKIEYDEHYATHDAGSAEIKYACVVCHKAVAGYTSFRRHCYDQHLQIAKFGCKYCDKTFMKQMYLDKHIMRRHSFNSSEDNRTNTPPHTQLDQAEIHDPGATGPPKPRKPTTIDLVGGILCVICQLTFGNKKEYDKHYATHNTGGAETEYACVVCRKSLAGYNSFRTHCYDQHVQKDKFKCKHCDKTFSKQSILNEHITAMHMYKCTKDDCTKQFTTEKDLHVHEFIHKKERNKPPYQCRTCYEQIDSIDACEEHIDQHCSFNYSCPICNEHTTKTNAANHLTKHFGDVLNEGDSEDCELPETSEDSSINVIGGIFCCYCENIYKNRLEYDVHFTAEHEEKAKVYCCIICKKQFETYSKFGCHCYDHISKARFECDECDKSFPRLSLLVQHTEAFHARAGAPPSFGCARCPRAYSSRKRLVAHARAAHDVLHHACTEPGCDTTFETPKDLILHQKQHKSTLDNWCRQCGLQFTTLASCEKHLDVHKEKLFACPVCGRRYGEKYLMMNHISQHFESVLHMCKVCGKIYDAKRRLIEHVKTHSTAKTYECEYCGKGFVKTNHLQQHLSIHTGMKPFKCLACPKTFGSYPNCHKHMRKMHNIDTKMLKKSANNSPMSNERSPFTMIQPDSVASESLMDTDDSTMDSESIDNIVIQKESPIFDVDMNPVDMAAALANDLPDNIVAFVTEAQEAMSAPPPPAAQPVPAAACAPVPEFSDDEDLDLGIGELIDLDDHLIPGIDPRLITSPAHALHYFDSFDQSITDRSKWEPPVITKLFDNFYGEIPDLGASRMPVMSTNYF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00674618;
- 90% Identity
- -
- 80% Identity
- -