Basic Information

Insect: Metalampra italica
Gene Symbol: -
Assembly: GCA_949699065.1
Location: OX452998.1:4866238-4867887[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 1.7e-05 0.00098 19.8 0.6 2 23 79 101 78 101 0.94

2 15 0.003 0.17 12.7 1.5 5 23 112 131 109 131 0.91

3 15 0.0065 0.37 11.7 1.5 3 23 139 160 137 160 0.92

4 15 4.7e-08 2.7e-06 27.8 1.1 2 23 168 190 167 190 0.96

5 15 0.00031 0.018 15.8 2.3 2 23 198 220 197 220 0.95

6 15 0.00041 0.024 15.4 1.9 1 23 227 250 227 250 0.97

7 15 4.7e-05 0.0027 18.4 2.1 2 23 256 278 255 278 0.95

8 15 0.00015 0.0085 16.8 1.8 2 23 294 316 293 316 0.94

9 15 5.7e-05 0.0033 18.1 1.3 2 23 324 346 324 346 0.96

10 15 5.9e-07 3.4e-05 24.4 1.2 3 23 353 374 352 374 0.97

11 15 0.0018 0.1 13.4 4.1 3 23 383 404 382 404 0.98

12 15 4.9e-05 0.0028 18.3 2.5 1 23 410 432 410 432 0.97

13 15 0.00066 0.038 14.8 5.8 1 23 438 461 438 461 0.97

14 15 0.0026 0.15 12.9 0.7 2 23 470 492 469 492 0.97

15 15 0.92 53 4.9 0.4 2 21 506 525 505 526 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	1.7e-05	0.00098	19.8	0.6	2	23	79	101	78	101	0.94
2	15	0.003	0.17	12.7	1.5	5	23	112	131	109	131	0.91
3	15	0.0065	0.37	11.7	1.5	3	23	139	160	137	160	0.92
4	15	4.7e-08	2.7e-06	27.8	1.1	2	23	168	190	167	190	0.96
5	15	0.00031	0.018	15.8	2.3	2	23	198	220	197	220	0.95
6	15	0.00041	0.024	15.4	1.9	1	23	227	250	227	250	0.97
7	15	4.7e-05	0.0027	18.4	2.1	2	23	256	278	255	278	0.95
8	15	0.00015	0.0085	16.8	1.8	2	23	294	316	293	316	0.94
9	15	5.7e-05	0.0033	18.1	1.3	2	23	324	346	324	346	0.96
10	15	5.9e-07	3.4e-05	24.4	1.2	3	23	353	374	352	374	0.97
11	15	0.0018	0.1	13.4	4.1	3	23	383	404	382	404	0.98
12	15	4.9e-05	0.0028	18.3	2.5	1	23	410	432	410	432	0.97
13	15	0.00066	0.038	14.8	5.8	1	23	438	461	438	461	0.97
14	15	0.0026	0.15	12.9	0.7	2	23	470	492	469	492	0.97
15	15	0.92	53	4.9	0.4	2	21	506	525	505	526	0.91

Sequence Information

Coding Sequence: ATGGAGCAAGAAATCGAGCTCGTGTGCGTGAAGCCTGACATATCTCCAATAAAACTGGAGGTCACCGTCGAAGTAGTGGCGAATCCAGAAAATCAAGCCGAGTACGACATTAAAGAAGAATTCCACGATGTTCCTTTAGACAACCCGTATGCAAACTACCTCGGGGAGTGTCCGACTGACAGAACCAGAGAAATAAACGGGAAAGTGTACGAGAACGGAAGAATTAACAGGATCGAATGCCCTCAATGTGATAGCACGTTTAAAAACCGAGCGAATCTGAAGCAGCATCTCAAATTTGTACATTCCACGGAAGAAGATATTGTCGAGTGCATCCAGTGCTACCGCACGTTCAAGTCACTGGGGCACCTACGCTCCCACATCAACTCCGTACACGCTGCGGAGAACGAAGTTATCTGTGAAATATGTCACAAAAGCTTCCTAAACAAGAAACGTCTCAACAATCATATTTTCTACGCGCACCCGAAGCCGGGAGAAAGCGTAAGCTGCAGTATATGCAACAAGAGTTTCAAACAGCAGTACAATTTGAAAATCCATATGCGTCAAGTGCATCCGTCCGAGGACAGCTCCGTGCAGTGCGACCGGTGCCACAAGAGCTTCAAAAACGATATGCTGCTACAGAGACATGTCAAATGGAATCACCCAGCGGACGGCATGGTGTACAAATGTCAGGAGTGCGGAAGGACTCTACCCTCCATCGGTTGCTACAAGAAGCACATGAAAAACGTACACTCCAGCTCCAGCGTGACCTGCCAGATCTGCTCCAAAGTGTTCAAAACTCCCAAAACGCTGCACCGGCACGAGAAGAACATACACGGCGACGGAAAACCGGAGCCGAAGCAGTACAAAACTGGAGATCTCAAGTGCTCAGACTGCGATAAGCATTTCGCCACGAACACCGCCTTGTTCTGGCATTTCGAGCGGAACCATTCGGAGAACAAACGCAGCAATTATTGTGATATGTGCCAGAAGGAGTTTTCTGATCATGCCGGCTTGAAACGGCACTTGGAGACTTCGCATTCCTCTGAGACCCCAGCGTGTCACATATGTCAGAAGATCTTCAAGTCGCCCATGAACTTGCAGAGGCACATCCGAGTCACCCACGCCCCGCCCGAGGCCTCCCAGCTCTGCGACATCTGCAACAAAACCTTCAAATGCTCCATGCATTTACGAATACACATTAACACGGTGCATCCGAAAGAGGGCTCTTTCTTCTGTGATATTTGCAATAAGGAATTCGCTTCGAAGAAGTACATGGTGAAGCACAGAAAGACCCACGTGTTCACTAAGGACTTCCCTTGCCATTTCTGTCACAAACTCTTCAAGTCTCAAAACGACGTTAAAAAGCACATAAAAAGggtacataatatacttttgTACAACTCTAACAAGTGTACCGTGTGTGCCATGGAGTTTTCCAGTCCGTTCACTCTGGAGGAACACAGAAAGAAGCAGCACGGAGCACAAACACAACCTGATTCAACCACAAAGTCAAAAACTTGTGTGAAATGCGGGACAAACTTCTTGAACGACGAAGATCTACATTCTCACATTTTGAAATGTGGAAATGAAACGGtgcatgaaattaaaattgaactcGAAGAACTCTCTAATCATGAGGATGATTGTTGA
Protein Sequence: MEQEIELVCVKPDISPIKLEVTVEVVANPENQAEYDIKEEFHDVPLDNPYANYLGECPTDRTREINGKVYENGRINRIECPQCDSTFKNRANLKQHLKFVHSTEEDIVECIQCYRTFKSLGHLRSHINSVHAAENEVICEICHKSFLNKKRLNNHIFYAHPKPGESVSCSICNKSFKQQYNLKIHMRQVHPSEDSSVQCDRCHKSFKNDMLLQRHVKWNHPADGMVYKCQECGRTLPSIGCYKKHMKNVHSSSSVTCQICSKVFKTPKTLHRHEKNIHGDGKPEPKQYKTGDLKCSDCDKHFATNTALFWHFERNHSENKRSNYCDMCQKEFSDHAGLKRHLETSHSSETPACHICQKIFKSPMNLQRHIRVTHAPPEASQLCDICNKTFKCSMHLRIHINTVHPKEGSFFCDICNKEFASKKYMVKHRKTHVFTKDFPCHFCHKLFKSQNDVKKHIKRVHNILLYNSNKCTVCAMEFSSPFTLEEHRKKQHGAQTQPDSTTKSKTCVKCGTNFLNDEDLHSHILKCGNETVHEIKIELEELSNHEDDC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00674494;
90% Identity: -
80% Identity: -