Mfus007382.1
Basic Information
- Insect
- Mesopsocus fuscifrons
- Gene Symbol
- MBD-R2_1
- Assembly
- GCA_950004255.1
- Location
- OX465376.1:5833209-5842038[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 6.3e-11 2.9e-07 30.0 0.1 15 72 245 300 241 305 0.87 2 3 2.6 1.2e+04 -4.0 0.0 47 59 392 404 391 408 0.79 3 3 4 1.8e+04 -5.5 2.5 13 18 603 608 599 611 0.76
Sequence Information
- Coding Sequence
- ATGAGTAAAAGCGGTGATAAATACTCCCAGCAGGAAGATACTCAGGATAGCTTGGGGGATGACAGTTTTTCCGCGGATAAAAGTAACTTCGTCATCGGAGCTAAGCTTGAGGCCACAGATGCAAGCGGAGTGTGGTATGCTGCCCGTGTAGAAAACGTTAATTGGGAGGAAAGAGAAGTGTTGGTGCATTTTGAGAGATGGAGTTGCAAGTTTGATGAGTGGATTCCTATGTGCTCCAATCGTCTTCGATCTATTCAGAAACCTCTCCCTCCaaAACCTCCCCCGAGATTCGAGCGTGGTCAGCAGGTGATTGCTGTTTGGTCTGCTTACAACAGATGTCCTGCGACAGTTCAGAGAGCTCTTCCAGATGGAAAATACGAGGTACTTTTTGAAGACGGGTTTGTAAAGCGCCTGCTGCCGTCCAAGATGTGGCACCTGGATGACGTGGTGAGCTCTCCGCGGAGCCCAGCTGAAGCCAGCATTGGCAGCAAGCAGGACCGCCGTGACCGCAAGCGGAAGCTCGTTGTCTCCGAGCTCTTCCGTTCCAATAAGAAGGTCAAAACGGATCCAAACGACAAAAAGACTGTGGCTGTAGCATCAACTTCTTCAGCCGTTGATGTGACTCATATGGAAGCCCCGGCCCCGCCTCCAGGCCGCAAGTCATTGCCCCCCATAGCCCACGCCCCACCTAAACCCATTGAGGTCAGACACCTGGACGGCCGCAAGGAGACGTGGCTCAAGATGCTGACACGGCGCTCTGAGGGCAAGACGGCGGGAAAACTCGAGATCGTGATTTGCTCTGCTTCTGGAAGAAAGTTTCGGTCCAGGGCGGACATAATTCGATATTGTGAAGAAAATAAGATCCTGTACGAGCCGACTCTTTTCGACTTCTCAGCTAAAGGAAGATCAAAGGCGAAATCCATCGTGCAGGGGAGCAACGAGGTTGCGGATGAAGAAGTGGTGGCACCAGTTGCGCCACCTGTCGCGCCTGACCCTCCGGTCATCCCCATGACCGCTCCGCTGACCACTCCAGAACCCGTAGAGGAAGAGCGAAGGTTCATTGGTGACTTGGAGGTCATCGTACAGGATGGCCAGTTCATTTGCCCTGTCACTGACTGCAGAAAACACTTCCGCAGGGAGAACCTCCTTCATATGCATATGAAGCATTACCACCCCGAGCTATCGAAGTACCTGGACTACACACCAAGTGTGACCGATCTAGCATATGCAAGGACTGTAAGCCTGGAACAGCAGGAAGGCAGCCCTACAGTGAGGCCGAGCCTTCGTTCTGATATCCGCTGCCCCGACGTTAAACGCTCTCCTGTGCGCATTAGGGATTGCAGAGTGGAGATGAACAAGGTGACACTGAGCACTGCTGTGGATGCCACTCCTCCTGCTACCATCCCCGAACCAGCAGAAGACGCCACCACGACGGATCCAGAACCGATACAGCCGATACAACCTCCTAGCTTGGCTGAAGTCGGCGCTTCTGTGGCGCCACATGAGGCGGTGACGGAGAGCGAGCGGGACGGGGTCGGAGGCACTGAAGGAGACTTAGAGGCGGTGATCCCTGCGAGTGTGCTGCAACGACCGAAGATACACTGGAAGCGCCGCCCCTACCACCGGCACCAGCTACCCCTTACAGATTGGTACGGGCGGATGGGAAAGCAGGCAGCAGCGGGGGGAGCAGCCAGCGAGGCTTCGGGTAAGCAGAAGGACGAAGAGTCCGGAGACCTGGTCCAACGCAACCCTATCCTGAACACGCTTCTCAGCTCGAGGCCGCTCGCCCCCACATTGGGATGGCGGCCTGGCTGGCGGAGGCGGCGGCGCGGAGGGTGGAACAAGCGCCGCCCCCCGCGCACGCTGCCTCCAGCTCTAGACCAGGGCCCAACTCCGCTCGCAGAACTCACAGATGGACTCGAAGACTCCAAACCTTCTCCAGGAGCAGACGGCAGTGACCTCTCCAAGTCTCCCGGCCCTGCTGACGGGGAGAAGTATGAAAAACTCCGCGGTAATGAAATCATCAACTGCACCTGCCAGATGAAAGAAGAGGACGGGCTCATGATACAGTGCGACGTCTGTCAGTGCTGGCAGCATGGCCATTGTCTGGGAATCGCTCCTCAGGGAGAGGTGCCGGAGTCGTATGTGTGCAGCGTGTGTAAGGACCCTCCTAAAGGGCGATCGTCTCGCAAGTACTACAACCATCAGGACTGGCTCAAGCAGGGCGTTCTTCCTACTCTTCCCTTCAAGCCAAAGTCTCCGTCGACACAGCGTCAGAACCTGCTGAAGAGGGCGTTCGAAATGAGcggtcagctgtccctactgTCTCGACTGCTGCACAGTTTGAGGGTGAAGCTGAATGTGGCCGGGAATAAGGATCATCCCAAGCTCTGGCTGTGGGCTAGACGATGGCAGGAAGCTCACAAGCCGTCTCACCCACTTCCCACTGTGAAAGAGGAAGAGCCTTCAATGCCAAAAGCACCTGAGCCCGAAAAGCCCATCGATCCTGTTGAGTGCAAAATGAATCTCTTAGAACATATTCAGCAGTATCATGATCTCGTGCAGGAGAGGTTAAACACATTAGAGGCTCAAGTAACAGACCTGGAAAATATGCAGGACGACGCAGGACAAGATGAGACACCGGATAGCTGTCCTCGAACTTCAGCCACGATCAAGATGCTTCTCCGTGATCTGGATACTGTCAAGAGAGTGGCTACATTACCTTGA
- Protein Sequence
- MSKSGDKYSQQEDTQDSLGDDSFSADKSNFVIGAKLEATDASGVWYAARVENVNWEEREVLVHFERWSCKFDEWIPMCSNRLRSIQKPLPPKPPPRFERGQQVIAVWSAYNRCPATVQRALPDGKYEVLFEDGFVKRLLPSKMWHLDDVVSSPRSPAEASIGSKQDRRDRKRKLVVSELFRSNKKVKTDPNDKKTVAVASTSSAVDVTHMEAPAPPPGRKSLPPIAHAPPKPIEVRHLDGRKETWLKMLTRRSEGKTAGKLEIVICSASGRKFRSRADIIRYCEENKILYEPTLFDFSAKGRSKAKSIVQGSNEVADEEVVAPVAPPVAPDPPVIPMTAPLTTPEPVEEERRFIGDLEVIVQDGQFICPVTDCRKHFRRENLLHMHMKHYHPELSKYLDYTPSVTDLAYARTVSLEQQEGSPTVRPSLRSDIRCPDVKRSPVRIRDCRVEMNKVTLSTAVDATPPATIPEPAEDATTTDPEPIQPIQPPSLAEVGASVAPHEAVTESERDGVGGTEGDLEAVIPASVLQRPKIHWKRRPYHRHQLPLTDWYGRMGKQAAAGGAASEASGKQKDEESGDLVQRNPILNTLLSSRPLAPTLGWRPGWRRRRRGGWNKRRPPRTLPPALDQGPTPLAELTDGLEDSKPSPGADGSDLSKSPGPADGEKYEKLRGNEIINCTCQMKEEDGLMIQCDVCQCWQHGHCLGIAPQGEVPESYVCSVCKDPPKGRSSRKYYNHQDWLKQGVLPTLPFKPKSPSTQRQNLLKRAFEMSGQLSLLSRLLHSLRVKLNVAGNKDHPKLWLWARRWQEAHKPSHPLPTVKEEEPSMPKAPEPEKPIDPVECKMNLLEHIQQYHDLVQERLNTLEAQVTDLENMQDDAGQDETPDSCPRTSATIKMLLRDLDTVKRVATLP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -