Basic Information

Transcription Factor Domain

TF Family: Fork_head
Domain: Fork_head domain
PFAM: PF00250
TF Group: Helix-turn-helix
Description: The fork head domain is a conserved DNA-binding domain (also known as a winged helix) of about 100 amino-acid residues. Drosophila melanogaster fork head protein is a transcription factor that promotes terminal rather than segmental development, contains neither homeodomains nor zinc-fingers characteristic of other transcription factors [1]. Instead, it contains a distinct type of DNA-binding region, containing around 100 amino acids, which has since been identified in a number of transcription factors (including D. melanogaster FD1-5, mammalian HNF-3, human HTLF, Saccharomyces cerevisiae HCM1, etc.). This is referred to as the fork head domain but is also known as a 'winged helix' [1, 2, 3]. The fork head domain binds B-DNA as a monomer [2], but shows no similarity to previously identified DNA-binding motifs. Although the domain is found in several different transcription factors, a common function is their involvement in early developmental decisions of cell fates during embryogenesis [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 8.7 1.9e+04 -2.6 0.0 49 59 9 19 8 28 0.80

2 3 4e-35 8.7e-32 110.6 0.1 1 85 58 141 58 143 0.97

3 3 2.1 4.6e+03 -0.7 0.1 30 42 172 184 159 195 0.78

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	8.7	1.9e+04	-2.6	0.0	49	59	9	19	8	28	0.80
2	3	4e-35	8.7e-32	110.6	0.1	1	85	58	141	58	143	0.97
3	3	2.1	4.6e+03	-0.7	0.1	30	42	172	184	159	195	0.78

Coding Sequence: ATGGCGCAAGTCTTCGAGTCAAACTTCTCCATAAGATCTATCCTCTCGCTTGAATCAAGCGATGGAAAAACAGAGCCACATTTTCAACTAGCCGGAGAACAAAGTATCGACGAGCAATACAGGGAAGAAAACTCTGCCCATGCCAATAGGGAAACTAATGAAGATACCACAGAGAAAGGACCATATACATACAGCGCCCTGATCGTAATGGCGATTCGTGCTAGTCCCCGGAAACTTCTCACAGTGAATGAAATTTATGCGTGGATCACAGATAACTTTCCTTATTATCGAAATACTAATATTCAGTGGCAGAATGCAATTCGTCACACTCTTAGCACAAAGGAGTACTTCGTCAAGGTGCCCAGACCCATGGACGACCCTGGAAGAGGAAACTACTGGGCAATACATCCCTCCTATGAAGATATCACTATTGGATCTACAACAGGACGCCTCCGAATAGAACAATATTGCCAGCTGAAGATGTTGAGAATGCAAGAAGCTGCCATCTTGGAGCAGCAAATGCGAAACAACTACCAGTTCTACCAGCAACAATTACTGCAtcagcaacatcaacaacaacatttttttccaatgcaTGCAGAAGCGCTGATGCATTGTGAACAATGA
Protein Sequence: MAQVFESNFSIRSILSLESSDGKTEPHFQLAGEQSIDEQYREENSAHANRETNEDTTEKGPYTYSALIVMAIRASPRKLLTVNEIYAWITDNFPYYRNTNIQWQNAIRHTLSTKEYFVKVPRPMDDPGRGNYWAIHPSYEDITIGSTTGRLRIEQYCQLKMLRMQEAAILEQQMRNNYQFYQQQLLHQQHQQQHFFPMHAEALMHCEQ

Sequence clustering based on sequence similarity using MMseqs2