Mequ004383.1
Basic Information
- Insect
- Merodon equestris
- Gene Symbol
- rfx7.L_1
- Assembly
- GCA_958301585.1
- Location
- OY284413.1:28811742-28816532[-]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 4.7e-32 1.3e-27 97.8 0.0 3 78 244 319 242 320 0.97 2 3 2 5.4e+04 -4.2 0.1 23 36 653 666 643 670 0.74 3 3 0.081 2.2e+03 0.9 0.1 23 41 1137 1155 1127 1162 0.83
Sequence Information
- Coding Sequence
- ATGTCCGAGAAAAATGTACACCAATTAcagtggaaacaaaaaaatcaagatCCAACGATCTACGCCTCCCGAAATGCAGAAATTCAATCGACTGCAGCAGCTGGAGCTGCTGGACTATCAAATAATCCATCACCACATTCGCCAGCGAACCTTGGAGCGACGACATCAAATAATGGACGTTACCCGATAATTGTGTCCGGTAATAATCAGCAAATAGTCACTTCACCAGGTGCATTGGTAAATTCAACTAGTTCGACTGGCTTGCAGCAGCAACATTTTCATCACATACAACATtttcaacaacagcaacaacatcaccaTTCACAGAATCAACATTTTGAATTATCGAAGATTATGGCTATAAATTCAGGCACAATGCCGAGGATGGAGCTAACTCCAGCCCTGGGCACCCATACGGTTTCAAGTGTTATCACAGAGAATGTTCTAAGTCTGATTGGGATGAATCGTATTGGTAGTACGGGGGGGTCTAATCAGCCGAGGGATGGTATGAAGATTCCTGAAGAGGAGAAGTTCCGAAAAGTCCAATCGCTCGTCGAATCAGGAATAAGCGATCATGCCAAGCAGCAAATCTTACAGATTCTCGACAGAATTTCATCCCTCAAACCAGTTGAGCGGCTACTTTTGTACCTTCGAATGCCGGGAGAGGCCCCTGAAACAGACCCTCTAAGGCAGCCACAAAACCCATTAGGGACACGATCTGAAATAAATCACACAATCAATTGGGTTCGTTCACATTTAGAACATGATCCAAAGGTTTCCATTCCAAAGCAAGATGTCTACAATGATTACCTAGGATACTGTGAGCGTTCGGATATAAAGCCGCTTTCAACAGCCGACTTTGGCAAGGTTATGAAGCAAGTATTCCCTGAAATTCGTCCCCGACGACTGGGAACTCGGGGACACTCGCGATATTGTTATGCGGCAATgcgaaaaacaacaaagctCAATCCACCACAGCTGCCGCTGCTTGGGGGCAAAACCCCAGACAATGCCCCGAGTGAAGTTATGGAGTCAGACGGCTACAACGAGTCATGGGGCACCGTTCGCAATTGGGCCGAAGGATTATTCAATGCTAAATTCGAAAATATCAAAGACTTGGCTGATCACATAGGAAAGGGTGATTACACAGCCTGTAGTGCAGGTAGTTCACGCGTTCTTCTACAAAAGAAACTGCTCCAAAGGGATGCGAAAGAGAAAAGAGTCTATGCCGATTCGGGACCATTGAAAAAACGGCGAAGGAAGAAACGAAAAGGATCCACATCCTCCGAATCTAGCACCACCGCCCACACGTCATCCATAGGATCACTACACGAGCCATCACGATCCGGCGACGAAATCCTCAGTGCCCACGCAATCAAACAAGAAGTTCTAGATTCACCAAATCCACAGCCCCGGCTACCGTCAGCACCTACGCACATGCATATGTCAGATATGAATGACTCGTACGATAGTCAAATACACGACCATCAAATGCTTCCAATGAATTTAGCAACAGAAAGCGATCGGAGCAAAGGCATCGGTGGTACGCTACCAATAAACAGCCCGGCGGCGAAGAACCTTTCTAAAGCCATTGCCGAGCTACCACCATCGGTCAGTCTGCTACCAATCGATCCAGCAGTACAACTAGCACCGGTTAAGGAAGAGATCATCAATGACGAATACAATCCTCAGAATGTGATATGCAAGAAGGTGCGACGTGCACACCTAGCCAAGGGCATCCTACCGTCGACTAGCGTGCCATCTAGCACCATAACTACCGTGGCCAGTACCGGATCACTTGAATCACAACCGATAGCACCACTAGTCGATTTACCACCGGCAGCTGTCAGCAACTATTCCATGGGACCACCGGCACAAATCACCACCACTGCAATGGAATCGGCAAAGCTAGTTTCACAAGTCCGTGCCCGGAAGCAACGCCTGTTGCAGGCCAATGCCGACATGTACCATCAGTACGACGAGCAACAGCAGCAGAGACAGTCGCCGCTTATGGACAATGTAGAAATAACCGAAGACAAGGATGTATTGCCAGAAAACCTAGGCCTGCCACGCGAGCGCGTGATAAGCATTTGTAACATGGATAAACACGAACTTGATGGCTATTTAAATACAAACGATGAAGACAACTCCCAAGATCAAGAGGCAGAATTGCTTCAATATTTTCAGATGGGAGACGCTGAGAACAATAATAGTAAagcgcagcagcagcagcaacaacaacaccaaacACATCATCTACAACAGCAGCTGCCGCTCGCGCAAACTCAATCAAATCTAGATGCTTCCCACCCAGTGTTGCCAGAAATCAATTCAAATTCGGCATTTGAAGTACCCAACAAGAAGAAATCAATCGTTGGGTCTATTGCCACTTTCCCGAAAGACCGTGATGACATCACGCAGCTTCGTAACTATCTGCATCAGAATTTCAATAAAGATTCGAATGAAAACACCGAAGCTCTCGCGGGAGGCACAATCGCCAACCAGAAGGAATGTATCCCATTGAACAACGGGAATCACTACATAATGCCGCCAAATCTCTACAACGAAGGGTCAGCCTCAGCGTCTCTTGCAATCATGTCAGAAAAGCATCTGAATGCAACAGCATCATCGTCATCCATAGCGATTAGTTCCGCAGTAGGACCAACATCTATCACAATAACTACTGCACCACATCATAATGTTGCTACCACGACTGCGGATCCAGCTATAATACCCGCAGACAACTACACCCTAATTCCAAACAACGTCCGAGCAACGCAGAAGAGAAAAATCAATCTTAACGCAATGGTACCTGGTCCAAGTACAACACAACGGCGAAAGAACTACACTTTCTATCCGATTTCGCCGAATTCGACAAATATCACGCCAAACAACGCTTCCACTCTACCCGGCACTTCTTCTTCAACCTCCATGCCGACAACAGGTAATAAAAGTCTATTTGCTAGTCCGAGAATAACTGCTACATCGGTGCGTACTAAGCCAACGTTACACAAGCAGCAATCGCTACCGGCCGCCGAAAAAGACTCGATTCTATCAGCGAATGATCCCATGATTGGAGCAAATCGTAATGGTTGTAAAAACTACGGCTCAGTGGCTTCGGCATCAGCACCGCCAAGTCCGTCGATCCTACAAGACGCGATGATGTTCGGTAAGGGTTATCAGCCAATAGCTACTTCGAATGCGATGGGAGACTACAGCAATCTAATGGTTTCCAATCACGATTATCATCAGCAAAATTTCACCAACTGTAGTTCGGGTAATAAGATGCTAACCGGCGATCAGAATTCTCTCGAATGCGTTCTCGACCAACCACCGCCGCATCTGATGTCTGAGTCACGATCAAGGAGCGTTCCACTGCACTACCGTCACAGTCCCGCATTCAATCAGACCTCAAACTATGCAGGATATACGTCAGCTTGCAGCTCGGCCGCTCAAACTCCGGTGCCAACGCAATTTACGGACTTTAGTGACCCGTCAACGATTCTGGACATCTTCAGTGATGCCAGTCAGAGTCACGAGGCTGCAATTAAAATCGAAGACACTACCAGTAGCCTGCTTTCCGGCTCGGTGGCTGATATTATGCCGCAATCGATTAATGATTACAGTCGACTACCAAACAGTTTCGGTGGAATCGTGTCCCGCTCGGTTCCATCGACGCCATTGCCTCTCCAGAATATGGTTGATCCATTTTTGAGCAGCAAAAAGcaccagcaacagcaacaacacgAGGCTTTTACTATTCAAAGTAAATATTCGACCAAAATGTACGATATCTCCAAGTCAATGCCAACCACACCGATCACGTCCAACACAGCCACGCCATCGTTCCGCTATAGTCCCGAATTCAATCGGGATTTTTTAATCAACGGCAATACGGTCGAGAGCACGCCGTCATATAGTCGTGCGCCATCGGTTACTGCAGCAGCTACTCCAAACTTATCCGATTCGTTGTTGGACGATGCCCGGGAAGGCGGATCCAATTCCTTAACCGATGGAATGGACGATCTGGGGGGTTTCGGTGTCTCGGAGTCTATCATCGAAGCGGACATACTACAGATGAACAATCTCTGA
- Protein Sequence
- MSEKNVHQLQWKQKNQDPTIYASRNAEIQSTAAAGAAGLSNNPSPHSPANLGATTSNNGRYPIIVSGNNQQIVTSPGALVNSTSSTGLQQQHFHHIQHFQQQQQHHHSQNQHFELSKIMAINSGTMPRMELTPALGTHTVSSVITENVLSLIGMNRIGSTGGSNQPRDGMKIPEEEKFRKVQSLVESGISDHAKQQILQILDRISSLKPVERLLLYLRMPGEAPETDPLRQPQNPLGTRSEINHTINWVRSHLEHDPKVSIPKQDVYNDYLGYCERSDIKPLSTADFGKVMKQVFPEIRPRRLGTRGHSRYCYAAMRKTTKLNPPQLPLLGGKTPDNAPSEVMESDGYNESWGTVRNWAEGLFNAKFENIKDLADHIGKGDYTACSAGSSRVLLQKKLLQRDAKEKRVYADSGPLKKRRRKKRKGSTSSESSTTAHTSSIGSLHEPSRSGDEILSAHAIKQEVLDSPNPQPRLPSAPTHMHMSDMNDSYDSQIHDHQMLPMNLATESDRSKGIGGTLPINSPAAKNLSKAIAELPPSVSLLPIDPAVQLAPVKEEIINDEYNPQNVICKKVRRAHLAKGILPSTSVPSSTITTVASTGSLESQPIAPLVDLPPAAVSNYSMGPPAQITTTAMESAKLVSQVRARKQRLLQANADMYHQYDEQQQQRQSPLMDNVEITEDKDVLPENLGLPRERVISICNMDKHELDGYLNTNDEDNSQDQEAELLQYFQMGDAENNNSKAQQQQQQQHQTHHLQQQLPLAQTQSNLDASHPVLPEINSNSAFEVPNKKKSIVGSIATFPKDRDDITQLRNYLHQNFNKDSNENTEALAGGTIANQKECIPLNNGNHYIMPPNLYNEGSASASLAIMSEKHLNATASSSSIAISSAVGPTSITITTAPHHNVATTTADPAIIPADNYTLIPNNVRATQKRKINLNAMVPGPSTTQRRKNYTFYPISPNSTNITPNNASTLPGTSSSTSMPTTGNKSLFASPRITATSVRTKPTLHKQQSLPAAEKDSILSANDPMIGANRNGCKNYGSVASASAPPSPSILQDAMMFGKGYQPIATSNAMGDYSNLMVSNHDYHQQNFTNCSSGNKMLTGDQNSLECVLDQPPPHLMSESRSRSVPLHYRHSPAFNQTSNYAGYTSACSSAAQTPVPTQFTDFSDPSTILDIFSDASQSHEAAIKIEDTTSSLLSGSVADIMPQSINDYSRLPNSFGGIVSRSVPSTPLPLQNMVDPFLSSKKHQQQQQHEAFTIQSKYSTKMYDISKSMPTTPITSNTATPSFRYSPEFNRDFLINGNTVESTPSYSRAPSVTAAATPNLSDSLLDDAREGGSNSLTDGMDDLGGFGVSESIIEADILQMNNL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00688342;
- 90% Identity
- -
- 80% Identity
- -