Mmel034969.1
Basic Information
- Insect
- Melolontha melolontha
- Gene Symbol
- -
- Assembly
- GCA_935421255.1
- Location
- CAKXYX010000289.1:640624-642711[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0008 0.093 16.7 0.7 1 23 19 42 19 42 0.96 2 20 0.19 23 9.2 4.4 1 23 107 130 107 130 0.98 3 20 0.0033 0.38 14.7 4.8 1 23 136 159 136 159 0.98 4 20 0.047 5.5 11.1 1.0 1 23 165 188 165 188 0.96 5 20 0.095 11 10.1 0.9 1 23 194 217 194 217 0.94 6 20 0.013 1.5 12.9 1.7 1 23 223 246 223 246 0.95 7 20 0.00062 0.072 17.0 2.5 1 23 252 275 252 275 0.98 8 20 0.0025 0.29 15.1 1.0 1 23 281 304 281 304 0.96 9 20 4.8 5.5e+02 4.8 4.0 1 23 310 333 310 333 0.96 10 20 0.0083 0.97 13.5 2.0 1 23 339 362 339 362 0.95 11 20 0.4 47 8.2 3.2 1 23 368 391 368 391 0.96 12 20 0.82 96 7.2 3.5 1 23 397 420 397 420 0.95 13 20 8.5 9.9e+02 4.0 0.5 1 23 426 449 426 449 0.94 14 20 0.096 11 10.1 1.8 1 23 455 478 455 478 0.95 15 20 0.00037 0.044 17.7 1.3 1 23 484 507 484 507 0.96 16 20 0.00082 0.095 16.6 1.8 1 23 542 565 542 565 0.96 17 20 0.0021 0.25 15.3 0.5 1 23 571 594 571 594 0.98 18 20 1.9 2.2e+02 6.0 3.8 1 23 600 623 600 623 0.96 19 20 0.0015 0.18 15.8 2.1 1 23 629 652 629 652 0.96 20 20 0.00026 0.031 18.2 3.0 1 23 658 681 658 681 0.98
Sequence Information
- Coding Sequence
- ATGTACATCACCGATTTCAGGAACCACACTAACGAGCATTACAAGGTGAAAATGTACAAATGTGGAATTTGTGACAAAAGATACAAGGCCAAGCAATCTCTCAAGCTACATGTAGAAAAAATCCATGCAGATAATGAAGGAAGAGATGTCCAAAAATACTTTAGGTGTGTCTATTTCAAAGCAAACGTTAAAAATATAAAAGAGAGATCTACACACTCGCATAATGGTGAAAAACAATGTCAGTACACGAAATGCAAATTTGAAGCAAGGAACAAATGTCACCCAAAATCACAAATAAAACATCTAAAGACAGGCAAATATAAGTGCGCGAATTGCGAATTTAACACTAATTACAGGTGTTATTTAGAAAGGCACATGAAAATAAAACATCTAATGGAAAATAGTTATAAATGCAAGGAGTGTGAATTCAAGACGAAAAACAAATACTATTTAAAATCACACGTGAAAACGAAGCATCTTGGAAAAAGAATTTATAAATGCGCAGAGTGTAAATACGGAACAAATTCCACGTCAGACTTAGACAAACACAGAAAAGCAAAACATCTGAAACAAAACTATTATAATTGCACGGAGTGTGAATTCAAGACGAATTACAAGTCAAGTTTCGAAGACCACATAATAGCAAAACATCTTAAAGAAAACAATTTTAAATGCATGGAGTGTGAATATAAGACAAACTACAAGGCAAATTTAAAAAATCATGTCAAAGGGAAACATCTGAACCAAAAGGATTATAAATGCACGGAGTGTGAATTCAAGACGAATTACAAGTCAAGTTTGCAAGTGCATATAAAAACAAAACATCTGGAACAAAATAATTTTAAATGCGCAGAATGTGAATACAAGACAAATTACAAGTCAAGTTTGCAAGTACACATAAAAGCCAAGCATCTTAAAGAAAACGATTATAAATGTACAGAGTGTGAATTCAAGACAAACTGCAAGTCAAGTTTCGAAGACCACATAAAGGCAAAACATCTTAAAGAAAACAATTTTAAATGCATGGAGTGTGAATATAAGACAAACTACAAGGCAAATTTAAAAAAGCATGTCAAAGGGAAACATCTGAACAAAAAGGATTATAAATGCACGGAGTGTGAATACGAGAACAACTACAAGTCATGTTTGGAAAAACATATAAAAGCAAAACATTTGAATCGAAAGGATTATAAATGCGCAGAGTGTGAATTCAAGACAAACTACAAGACATGTTTAAAGGTGCACGTAAAAGGAAAACATCGCAATCAAAAGGATTATAACTGCGCACAGTGTGAATTCAAGACGAATTACAAGTTAACTTTAGAAGGACACATACAGGGGAAACATCTGAATCAAAAGAATTATAAATGCGTAGAGTGTGAATTCAAGACAAGCTACAAGAAATATTTAACAGAACACGTAAAAGCGAAACATCTTAAAGAAAATAATTATAAATGCACAGAGTGTGAATACAAGTCAAACTACAAGTCAAATTTACAGGTACACATAAAGGGAACACATCTGAAACAAAAAGATTATAAATGCATCAAATGTGAATACGAGACAAACTACAAGACATGTTTAAAGGAGCACGTAAAAGCAAAACATCTGAAACAAAATGATTATAAATGCACAGAGTGTGAATACGAGACAAACTACAAGTCGTATTTAAAAGTACACATGAAAGCTAAACATCTGAAACAAAAGGATTATAAATGCACGGAGTGTGAATACATGGCAAATCGCAAGTTAAATTTACAAGTGCACATAGAAACAAAGCATCTAAAACAAAAGGGTTATAAATGCACACAGTGCGAATTCAAAACAAACTACAAGTCATGTTTAGATGGCCACATAAAAGCAAAACACCTGAAGCAAAATGATTATAAATGCGCAGAGTGCGAATTCAAGACAAACAACAAGTCATATTTAAAGAAACACATAAAAGCGAAACATCTTAAAGAAAGTGATTACAAATGCATGGAGTGTGAATATAAGACCAACTACAAGTCAAGTTTAGAAAGACACATGAAAACAAAACATCTTAAAGAAAGCGTGGAGGATGAATTCAAGACAAGTCCTATTTAA
- Protein Sequence
- MYITDFRNHTNEHYKVKMYKCGICDKRYKAKQSLKLHVEKIHADNEGRDVQKYFRCVYFKANVKNIKERSTHSHNGEKQCQYTKCKFEARNKCHPKSQIKHLKTGKYKCANCEFNTNYRCYLERHMKIKHLMENSYKCKECEFKTKNKYYLKSHVKTKHLGKRIYKCAECKYGTNSTSDLDKHRKAKHLKQNYYNCTECEFKTNYKSSFEDHIIAKHLKENNFKCMECEYKTNYKANLKNHVKGKHLNQKDYKCTECEFKTNYKSSLQVHIKTKHLEQNNFKCAECEYKTNYKSSLQVHIKAKHLKENDYKCTECEFKTNCKSSFEDHIKAKHLKENNFKCMECEYKTNYKANLKKHVKGKHLNKKDYKCTECEYENNYKSCLEKHIKAKHLNRKDYKCAECEFKTNYKTCLKVHVKGKHRNQKDYNCAQCEFKTNYKLTLEGHIQGKHLNQKNYKCVECEFKTSYKKYLTEHVKAKHLKENNYKCTECEYKSNYKSNLQVHIKGTHLKQKDYKCIKCEYETNYKTCLKEHVKAKHLKQNDYKCTECEYETNYKSYLKVHMKAKHLKQKDYKCTECEYMANRKLNLQVHIETKHLKQKGYKCTQCEFKTNYKSCLDGHIKAKHLKQNDYKCAECEFKTNNKSYLKKHIKAKHLKESDYKCMECEYKTNYKSSLERHMKTKHLKESVEDEFKTSPI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00990216;
- 90% Identity
- -
- 80% Identity
- -