Mmel065438.1
Basic Information
- Insect
- Melolontha melolontha
- Gene Symbol
- -
- Assembly
- GCA_935421255.1
- Location
- CAKXYX010000542.1:970748-972511[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.036 4.2 11.5 2.8 1 23 2 25 2 25 0.96 2 18 0.055 6.3 10.9 5.3 1 23 92 115 92 115 0.98 3 18 0.0055 0.64 14.0 1.4 1 23 121 144 121 144 0.96 4 18 0.0087 1 13.4 4.4 1 23 150 173 150 173 0.98 5 18 3e-05 0.0035 21.1 0.5 1 23 179 202 179 202 0.98 6 18 0.00066 0.077 16.9 0.2 1 23 208 231 208 231 0.96 7 18 0.00016 0.019 18.8 0.5 1 23 237 260 237 260 0.98 8 18 0.021 2.5 12.2 2.4 1 23 266 289 266 289 0.98 9 18 0.004 0.47 14.4 0.5 1 23 295 318 295 318 0.98 10 18 0.0042 0.49 14.4 0.7 1 23 324 347 324 347 0.96 11 18 7.8e-05 0.0091 19.8 2.3 1 23 353 376 353 376 0.98 12 18 5.8e-05 0.0067 20.2 1.4 1 23 382 405 382 405 0.98 13 18 0.00023 0.027 18.4 3.5 1 23 411 434 411 434 0.98 14 18 7e-05 0.0082 20.0 1.0 1 23 439 462 439 462 0.98 15 18 3.1e-05 0.0037 21.1 1.3 1 23 468 491 468 491 0.98 16 18 0.026 3 11.9 1.4 1 23 497 520 497 520 0.96 17 18 0.00022 0.026 18.4 2.7 1 23 526 549 526 549 0.98 18 18 0.00026 0.031 18.2 2.0 1 23 555 578 555 578 0.96
Sequence Information
- Coding Sequence
- ATGTACAAGTGTAGATTTTGTCGCAGAAGATACAAGGCCAGAAAATCTCTTGAGACGCATATGGTAAAAATTCATGCTGACAATACAGGAAGAGATGTCCAAAATTACTCTACGTGCGACTATTTCGAAGCTAATGTTAAAAATATGAAAGGGAAATCTGCACAATCATATGCTGGTGAAAAACAATGTCAATCATCGAAATACAAATTTCAAACGCGGAACAAATGTCGCTTGAAACCACTTATAAAAGTAAAACATCTCAGCGGAGGCAAATATAAGTGCGCACATTGCGAGTTTAAGACATATTACAGGTCTTATTTAGAAATGCACATGAAAAGGAAACATCTGATGGAAAGTTATTATAAATGCAAGGAGTGTCAATACCAGACGAACTTCAAGTCAAGTTTGGAAGTACACACAAAGGCAATACATCTGAAGCAAAAGGCTTATAAATGCGCAGAATGTAAATTCAATACAAATAACAGGTCACATTTAAAATTACACGTGAAAACGAAACATCTTAAAGAATTTAATTATAAATGCGGAGAGTGTGAATACAGGACAAATAGCAAGTCAAATTTAGAAATACACATAAAGACAATACATCTTAAAGAACACGATTATAAATGTGCAGAGTGTGAATACAAAACAAACCGGAAGGCAAATTTAGCACAGCACATAAAGGCAATACATCTTAAAATAAGAGATTATGTATGCGCGGAATGTGAATACAAAACAAACAGTAAGAATAATTTAGAAAAACACATAAAGACAATACATCTTAAAGTCGGCGATTATAAATGCGCAGAATGTGAATACGAAACCAACGAGAAGTATTGTTTGGAGAATCACATAAAGACAAAGCATCTTAAAATAAGAGATTATAAATGCGCAGAGTGTGAGTATAATACTAACAACCTTCTTTCTTTAGAAAGACACATTAAGACAATGCATCTTAAAATATGCGATTATAAATGCGCAGAGTGTGAATTCATGACAAATTACAAGTCGGGCTTAGTAAAACATATGAAAGCAAAACATCTTAAAGAACACAATTACAAATGCACAGAGTGTGAATACAAGACAAGTAGGAACACAAATTTAAAAGCACACGTAAAGACGAAACATCTTAAAGAATATGATTATAAATGCACAGAGTGTGGATACGAGACGAACCGCAAGCAAGATTTCCAAAATCACATAAAGACAATACATCTTAAAGTAACTGATTATAAATGTGCAGAGTGTGAATACAAGACAAATCGCAAGTCACACTTAGAAAGTCATATAAAGACAAAACATCTGAAAAAGGATTATAAATGTATGGAATGCAAATATGAGACAAGCCAAAAGTCATGGTTAGAAAAACACATAAAGACAATACATCTTAAAATAACCAATTATAAATGCGCAGAGTGTGACTACAAGACAAATAGGAAGTCATATTTAGAAGCACACATAAAAACGAAACATCTTAAAATAAGCGATTACAAATGCGCAGAGTGTGACTACAAGACAAACCACATGCCATATTTAAAAAAACACGTAAAAGCGATACATCTTAAAGAATACGATTATAAATGCGCGGAGTGTGACTACAAGACAAACAACAAGACACATTTAGAGAAACACGTAAAAACAATACATCTTAAGGAATACGATTATAAATGCACAGAGTGTGACTACAAGACAAACAACAAGCCACATTTAGAAAAACACTTAAAAGCGATACATCTTAAAGAATACGATGATGAATGCACATAG
- Protein Sequence
- MYKCRFCRRRYKARKSLETHMVKIHADNTGRDVQNYSTCDYFEANVKNMKGKSAQSYAGEKQCQSSKYKFQTRNKCRLKPLIKVKHLSGGKYKCAHCEFKTYYRSYLEMHMKRKHLMESYYKCKECQYQTNFKSSLEVHTKAIHLKQKAYKCAECKFNTNNRSHLKLHVKTKHLKEFNYKCGECEYRTNSKSNLEIHIKTIHLKEHDYKCAECEYKTNRKANLAQHIKAIHLKIRDYVCAECEYKTNSKNNLEKHIKTIHLKVGDYKCAECEYETNEKYCLENHIKTKHLKIRDYKCAECEYNTNNLLSLERHIKTMHLKICDYKCAECEFMTNYKSGLVKHMKAKHLKEHNYKCTECEYKTSRNTNLKAHVKTKHLKEYDYKCTECGYETNRKQDFQNHIKTIHLKVTDYKCAECEYKTNRKSHLESHIKTKHLKKDYKCMECKYETSQKSWLEKHIKTIHLKITNYKCAECDYKTNRKSYLEAHIKTKHLKISDYKCAECDYKTNHMPYLKKHVKAIHLKEYDYKCAECDYKTNNKTHLEKHVKTIHLKEYDYKCTECDYKTNNKPHLEKHLKAIHLKEYDDECT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00989966;
- 90% Identity
- -
- 80% Identity
- -