Mdia010591.1
Basic Information
- Insect
- Meloe dianella
- Gene Symbol
- zfh1
- Assembly
- GCA_028455855.1
- Location
- JAPTHL010000048.1:5163487-5165082[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.015 68 3.3 0.0 22 46 169 193 162 200 0.87 2 6 0.0013 5.8 6.7 0.0 21 45 227 251 222 258 0.85 3 6 0.17 7.4e+02 -0.0 0.0 23 44 257 278 251 282 0.79 4 6 8.5e-05 0.38 10.5 0.1 21 45 283 307 278 316 0.85 5 6 0.11 5e+02 0.5 0.1 21 45 311 335 303 344 0.70 6 6 0.0028 13 5.6 0.0 21 44 367 390 360 397 0.89
Sequence Information
- Coding Sequence
- ATGATTCGAAAAGTCTGTAGGATTTGTATGAGTGAATCAAATGAGACACTCGCTTTATTTACATCAACCATATCAAATAATGAAGTTAGTTTAGTGAATTTCTTGCAACAAATCACAAATTTAGAGATTGTTGAAAATGATGGTCTACCGGCTTTAATTTGTTCCAAATGTTATCAAAAACTGATTGACGCCTTTGAATTAATACAACTATGCATTCTATCCGATTCAATATTGAAGAATACTGAGGAAAACTTAACTGAAACAGAACAATTGGACGGAATTATAAAAACTAACGATTTAAAAGATACGAATGTTATCACAGAGAAATCGAATCTGTATTGTTGTAGTAAATGTTCGTCTACATTTAAAAAGAAAATacatttaaacgtacatctacgatcacacatgaaaaatgatagaaacaagaagttcatttgtagaatttgcgataaacagtttgcttatcagtatttgttgaaacaacacgaatataaacatagcgatgataaaccgttcccatgTACGGTATGTTCAAAAGgttgtttaacagcagaaagtctaaggcgtcacatgaaaatccacgatgaaaactatacgaaaaagacacattcatgtgatatctgtatgaaagaattcgcatatccaagttttctagctgagcacatgaagaatcatacaggcgaaaaaccgtatttatgttcgatatgtggtaaaggtttccgacaaagtggtgctttacattaccatcaacgtgtccatactggttataaaccgtttagttgtgagatatgtaaaggcacttttatgtcgcaaagtgtcctgcgggtgcatatgcgtaaacatacaaacgaacgtccgtatatttgtcatatttgtggtatggcatttcgtcaatctaccgatttgaaaagccatcaacgtacacattccggtgataaaccagttttatgtacaatatgcggtaaacgtatgtcgactactggccaattaacaatacatttacgtacacataccggtgagaaaccatttggttgtacgaaatgttcaaaagcattcacaacacgaacaatgttggtgaaacatgaacgtatacataccggtgaacgaccatatgtttgtgatatttgtggtaaatcattcaatcaaagtagcacattaaaaacacattatggtacacataaaaacataaaaatgaaacaacaaaggaataatatacaattaaataaagATGTTATTGATAATAATTTAATTGAAATTAATGATAATAATGAATTAAATAAAAGTATTGAAACGATTGAAACGGAAATTGTAACAGAACAATTTATTAATGATAGTATTCGAATGATTAATACGGAACATGATAGTGAAGTTAAGGCACATTTTACAGTTGTATTACCAGCACCAATACCACAATTGCATAATCTTTAA
- Protein Sequence
- MIRKVCRICMSESNETLALFTSTISNNEVSLVNFLQQITNLEIVENDGLPALICSKCYQKLIDAFELIQLCILSDSILKNTEENLTETEQLDGIIKTNDLKDTNVITEKSNLYCCSKCSSTFKKKIHLNVHLRSHMKNDRNKKFICRICDKQFAYQYLLKQHEYKHSDDKPFPCTVCSKGCLTAESLRRHMKIHDENYTKKTHSCDICMKEFAYPSFLAEHMKNHTGEKPYLCSICGKGFRQSGALHYHQRVHTGYKPFSCEICKGTFMSQSVLRVHMRKHTNERPYICHICGMAFRQSTDLKSHQRTHSGDKPVLCTICGKRMSTTGQLTIHLRTHTGEKPFGCTKCSKAFTTRTMLVKHERIHTGERPYVCDICGKSFNQSSTLKTHYGTHKNIKMKQQRNNIQLNKDVIDNNLIEINDNNELNKSIETIETEIVTEQFINDSIRMINTEHDSEVKAHFTVVLPAPIPQLHNL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00987322;
- 90% Identity
- iTF_00987322;
- 80% Identity
- iTF_00987322;