Mdia002019.1
Basic Information
- Insect
- Meloe dianella
- Gene Symbol
- L
- Assembly
- GCA_028455855.1
- Location
- JAPTHL010000045.1:4428245-4437165[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0014 0.086 13.0 3.0 1 23 83 105 83 105 0.99 2 19 0.053 3.2 8.0 5.8 1 23 111 133 111 133 0.97 3 19 2.8e-06 0.00017 21.5 3.2 1 23 139 161 139 161 0.99 4 19 0.00012 0.0073 16.3 0.3 1 23 167 189 167 189 0.99 5 19 0.013 0.79 9.9 0.1 2 23 242 264 241 264 0.95 6 19 0.0012 0.07 13.2 1.2 1 23 294 317 294 317 0.97 7 19 0.0064 0.39 10.9 0.0 3 23 425 445 424 445 0.97 8 19 0.00028 0.017 15.2 2.6 3 23 455 476 453 476 0.87 9 19 0.00033 0.02 14.9 0.4 1 23 481 504 481 504 0.94 10 19 0.00075 0.045 13.8 2.3 1 23 568 591 568 591 0.95 11 19 0.57 34 4.8 0.8 1 23 629 652 629 652 0.90 12 19 0.00019 0.012 15.7 2.6 2 23 664 685 663 685 0.97 13 19 0.00058 0.035 14.2 1.0 1 23 694 716 694 716 0.98 14 19 7 4.2e+02 1.3 0.8 3 23 725 745 724 745 0.94 15 19 6.9 4.1e+02 1.4 0.9 3 14 793 804 791 805 0.85 16 19 0.92 55 4.1 0.9 1 23 843 865 840 865 0.91 17 19 0.015 0.9 9.7 0.5 2 23 874 895 873 895 0.95 18 19 0.036 2.2 8.5 0.6 1 20 903 922 903 925 0.95 19 19 3.3 2e+02 2.4 0.2 1 10 932 941 932 947 0.91
Sequence Information
- Coding Sequence
- ATGAAAATGTTCTTTAAAGGTAATAGTAGTCGATTGGAATCGTTGATTGAAAAAATTCAGTCGTCACGTGATGAATTCAAAACACCAGTTGAAAGACTTGTGTTTCAGTTTCAGTTTGTTTCAGTTGCCGAAGAAGAAACAGCCGGTAGTTCAAATTCAGGTGGTTCAATTGAAACTGTACAAGGTTACGACGATATTATTAGTTCTGAAGAATTAAAAAGTGATCAAGAACGTAAAATTGGTCCATATAAGTGTACAGTGTGTGGTTTAAATTATTTTAAAGAAAAACATCTCAGGGAACACGAACAGACTCATATTGATCATCTTCAATTTACTTGTTCCTACTGTCCGCGACTATTCAAACACAAACGTTCCAGAGATCGACACACCAAATTACATACTGGCGATAAGAAATATAAATGTCAACAATGTGAATCTGCATTTTCCAGAAGTGATCATTTGAAAATCCATATGAAAACTCACGACAGTCGAAAACCTTACAAATGTGGCACGTGTAATAGGGGTTACAATACAGCTGCTGCCCTTTCCTCCCATCAACAAAGCCATTTAAAACAAGAATCAAGATCAGGAAGTCGGACAAGTGGAGGAACTGATTTATTACAGACACATGTGACAATGGTGCATAGTGATACAGATTCGACGTTAAGTCAAACACCGGAACCAAGTTCGGATTATCAAACGCAAATTGACGATATCAAAATCGTTTGTATGTATTGTTCGAAAGAATTTCCTAGTTTGGATTTGATGTATCAACATACGAATGTTGCCCACAAAGATGTACCGAATGGTTCAACATCGTTACAATCACCAACGCATAGCTCACCAAAACAAGAGATTTACCAAAATGGCAGTCCAACATATGCGTGTGATCGTTGTACAATGCATTTTGATTCCATGCAAAATTTAAAAGAACATATTAATACCGTCCATTGGCAACCAACAATATCACCATCATCAGTCAATTATGGTACATCACAATTGATAAATATAGAAAAACCGTATACACAATTTCAAACACAACCAACCGATTTGAGTCGTAAAAAGAAAAAAGATGAAATTAATGATAAAGCGACCATATCGAAAAAAACAAAAAAGGATAATTTATCATCACCGAATACATTAAGTCCATACGATTCAAATGATAAACCATGTATATGTTCCTGTTGTTATGCACAATTGCCAAATTTTAAAAGTTTTTTAAATCATATGGAAACACATGTTATATCAACAAATAATTCATTATTGGGATTTTGTCCTGTTTGTGGTGAACCAGGACGTGATCCTGTTAGTTTTACAAATCATATATTCAGTCATGCTATTGCTCAAGTACCTGGACGTTGCTGTTATGTTTGTAAAAAATCATTTGAACGTTCTGATGAATTACAAAAACATCTGTTTGATATACATGTTATATCAATTTTTAAATGTTCAATATGCAATGAAGTATTCGATACGAAAATATCAATGCAGCTACACTTAGCAAATAAACATAGTGACGAATGTAAACATTTTAAATGTTATTTATGTACAAATCAAGTATTTCATGATCAATTATCAGCTGAACTTCATATATCTATGAAACATTATAATCAATTCACACCATGTATAGGATCAAGTCAGTTAATAAGGCCACAATATCAGTTAGAATTAGATACAAGATTACGCGATTATGGATTTATATTTCAGTGTACATTTTGTCAAAAAACATTTAAAGATCAATATTCACAATATATTCATATTGTTAAAGAGCATAGTGAAACTAAAGAAGGTGACAAATTTATGGATCAAAATCCGTCCAGATCACCAAATTTCTTTTCGAAAATCCTCCAATCACCCGATAAAAATTTAGAAACAATCGACAATTATAATTGTGATATATGTAATCGTAATGATTTTAATACAGAAAATGATTTATTAACCCATAAAAAATTGCATAATGTCAAATGTAAAATTGGTCCAGTTAGTCTTCAATGTGCATATTGTAACGAATATTGTAAATCACGTAATGATTTAGAAAATCATATGAAAACACATCAAGTTAACAGTAATAAAGGCAAACATAAATGTAATATATGCGACGAAATATTTTCATCAACATTGACATTAGCTGATCATAAATTAACACATTGTAAAATTGTCGATGGCAACAATTGTGTTCAATGTAAATCTGTATTAACTGATGAACAATCGTTTTATAATCATCAATATCAACATAGTAATATACCGACAAAATCAAATACACAAATATCATTACCAGCTAATTGTATTATATGTTGTCAAACATTACAAACAGATGTTGAAGTGAAATTGCATGCAAAATTCCATTTGAAACATTTATTACAAAAAGAATGTTTATGTGGTGTTTGTAATAAAGTCTACGATAGTCATAGTGGTCAAATAATTAACAATTACGATAAAACAACGGATGGTTTAAGTGTGATTTTATGCAAAAATTGCAATACGAATACATCAAATGATCAGAAAAATCCAAATAGTTGTAGTAAATTCGTTTGTATACAATGTCCACAAACATTCGATAATGAAAATGACATACAAAACCATTCAACAATACATATGATGAATGATGATACGAATCTCGAATGTCGTTTATGCAAACAAATATTTACATCAACAATAAAATTGCAAACCCACTTAATTGAACATAATTTCTATGGTATGAATCAATATAGTTGTTATGTATGTTCATCTGTATTTACAGCAGCTAGTGGTCTACAAAATCATATAATTTGTCATGGTTTAGATAGTCGGCCTTATGAATGTAATCAATGTCAAATGAAATTCTTTTTAGAACCGAATTGGACAATCACCGTTTCAAATACGTATATGGATAATTCATTTTATTTAGAACATTTAAATCAGTGCCCTTTTAAATTAAATCCAAAAAATGAATATGATACCGGCGATATTGACAATAATATTAAACAGGAGTTAAATGATAACATGCGGGTTACAACAAATGACAAAGATGAGCAATAG
- Protein Sequence
- MKMFFKGNSSRLESLIEKIQSSRDEFKTPVERLVFQFQFVSVAEEETAGSSNSGGSIETVQGYDDIISSEELKSDQERKIGPYKCTVCGLNYFKEKHLREHEQTHIDHLQFTCSYCPRLFKHKRSRDRHTKLHTGDKKYKCQQCESAFSRSDHLKIHMKTHDSRKPYKCGTCNRGYNTAAALSSHQQSHLKQESRSGSRTSGGTDLLQTHVTMVHSDTDSTLSQTPEPSSDYQTQIDDIKIVCMYCSKEFPSLDLMYQHTNVAHKDVPNGSTSLQSPTHSSPKQEIYQNGSPTYACDRCTMHFDSMQNLKEHINTVHWQPTISPSSVNYGTSQLINIEKPYTQFQTQPTDLSRKKKKDEINDKATISKKTKKDNLSSPNTLSPYDSNDKPCICSCCYAQLPNFKSFLNHMETHVISTNNSLLGFCPVCGEPGRDPVSFTNHIFSHAIAQVPGRCCYVCKKSFERSDELQKHLFDIHVISIFKCSICNEVFDTKISMQLHLANKHSDECKHFKCYLCTNQVFHDQLSAELHISMKHYNQFTPCIGSSQLIRPQYQLELDTRLRDYGFIFQCTFCQKTFKDQYSQYIHIVKEHSETKEGDKFMDQNPSRSPNFFSKILQSPDKNLETIDNYNCDICNRNDFNTENDLLTHKKLHNVKCKIGPVSLQCAYCNEYCKSRNDLENHMKTHQVNSNKGKHKCNICDEIFSSTLTLADHKLTHCKIVDGNNCVQCKSVLTDEQSFYNHQYQHSNIPTKSNTQISLPANCIICCQTLQTDVEVKLHAKFHLKHLLQKECLCGVCNKVYDSHSGQIINNYDKTTDGLSVILCKNCNTNTSNDQKNPNSCSKFVCIQCPQTFDNENDIQNHSTIHMMNDDTNLECRLCKQIFTSTIKLQTHLIEHNFYGMNQYSCYVCSSVFTAASGLQNHIICHGLDSRPYECNQCQMKFFLEPNWTITVSNTYMDNSFYLEHLNQCPFKLNPKNEYDTGDIDNNIKQELNDNMRVTTNDKDEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00842108;
- 90% Identity
- -
- 80% Identity
- -