Math034482.1
Basic Information
- Insect
- Mellicta athalia
- Gene Symbol
- -
- Assembly
- GCA_905220545.1
- Location
- HG992200.1:679544-687475[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 6.9 8.5e+02 2.1 0.2 2 16 73 87 73 89 0.80 2 27 0.0012 0.15 13.9 1.4 2 21 166 185 165 186 0.94 3 27 3 3.7e+02 3.2 1.5 1 23 219 242 219 242 0.95 4 27 0.28 35 6.5 3.4 3 23 247 269 246 269 0.90 5 27 0.59 73 5.5 2.7 3 21 274 292 273 293 0.93 6 27 0.0031 0.38 12.6 1.1 2 23 337 359 336 359 0.95 7 27 0.013 1.6 10.7 1.4 1 23 392 414 392 414 0.98 8 27 0.00084 0.1 14.4 0.5 1 23 420 443 420 443 0.97 9 27 0.0055 0.68 11.8 1.2 3 23 454 475 453 475 0.97 10 27 4.1e-05 0.0051 18.5 0.9 1 21 592 612 592 613 0.95 11 27 5.1 6.2e+02 2.5 0.3 3 23 619 639 618 639 0.83 12 27 0.0018 0.22 13.4 0.2 2 23 645 667 644 667 0.94 13 27 0.001 0.12 14.2 1.1 1 23 672 694 672 694 0.98 14 27 1.9 2.4e+02 3.8 4.1 1 21 697 717 697 718 0.93 15 27 0.00024 0.03 16.1 0.9 1 23 730 753 730 753 0.93 16 27 0.039 4.8 9.2 3.5 1 23 759 781 759 781 0.97 17 27 4.1 5e+02 2.8 0.3 1 23 815 838 815 838 0.87 18 27 7e-05 0.0086 17.8 1.0 2 21 962 981 961 982 0.94 19 27 0.04 5 9.1 0.1 2 23 988 1010 987 1010 0.95 20 27 2.4 3e+02 3.5 1.7 2 23 1016 1038 1015 1038 0.95 21 27 6.6e-05 0.0081 17.9 0.8 2 23 1044 1065 1043 1065 0.96 22 27 7 8.6e+02 2.1 2.0 2 21 1069 1088 1069 1089 0.90 23 27 2.3e-05 0.0028 19.4 2.8 1 23 1115 1138 1115 1138 0.95 24 27 0.00057 0.07 15.0 0.5 1 23 1144 1166 1144 1166 0.95 25 27 0.13 16 7.6 0.1 1 23 1172 1194 1172 1194 0.97 26 27 0.0048 0.59 12.0 0.6 1 23 1200 1223 1200 1223 0.94 27 27 1.4e-05 0.0018 20.0 2.1 2 23 1230 1252 1229 1252 0.95
Sequence Information
- Coding Sequence
- ATGACACGGCAAGTGGATGTAAAGGCTCTTGTATCACATGTGATACGCGGTGATGGTGTAAATAGGTGCCGAATATGTATGGGAGATACATCAGAAGGACAAGTGCAGTTAGGTGATACAGTTATAATGGATGGAGACAGACCTGTAACTCTCTCTGAACTTCTGGAATCAGTTACAGGAATTAAGATGCCGGTAGATGGAGACCTGCCGTCCGGAGTATGCCCGGAATGCTCCAAATGTGCCATAAATGCAGCGGAGTTTAGAATGCTGTGCCACCATGCCGTCAGCCAATGGGAGATAACAATACAGCTGTTACAGAACCTGCCACTGCAACGGAACAACTCAAAAAAGACCATGTTTGCTATTATTGATCAAAGTCAAATGGTTATTATAAACGACGACACGTCTGACTCATTTAGTATCAGTTCTGCTGCACAGAGATTGACAGAACATTTAAATCCTGACCAAATTAAAAAGGAGAGTAATGTCTCGTGCGAATGTCCCAATTGTGGGAAACAGTTTGAGTACGCACAGCAGCTAAGTCATCATTTGAAAGAATCGACGGATCATAAGCGAGCCTGCCATATATGTGCCAAGATAATGTACCGAGATGATCTTCCAAGACATATGAAGAAGGTGCATAAAAGAAATCCTTATGATTGCAAGAAGTGTCCAGCGTTGCTGTACTCTCATAATCAGTATGTAAGGCACTTAACGAAGGCGCATACTCGGGGAGCGTGCACGTGTATCGAGTGCGGACGGAGCTTCCACTCACGGAACGGTTATCACGCTCATGTCTctatacacagaccgaagaacTGTCCGAGTTGCGACAAgctatttaaaaatcaaatgtGCTACGTGCATCATGTGAAAAATTGCTGTAATCTCGACAAAAATAGAGAAGACACTCACCGTACGACGAAAAAAGTAACAGTGGAAGTTAGAAATAAAAGCAGTAATAGACCTATAAAGGTAGGTCTCCGAGGCAGTGCGGATAAGGAATGTATATGTGATCACTGCGGGAAAAAATTTGCTGGCAAAAAGTTTGTAGCAGCTCATATACAGATAGTCCACATGAAGAACACTCATCGCCCCTGCGTGTACTGCGGCAAGTTGTTAGCAGCGGCGCACATGACTCAACATGTCAAACAACACGAATTGGACTTGTCGTTCACTTGTGAACATTGCAATGTTGTTCTGAAGACTAAGTTAGGCTATATTCAACATCTACGACTCCACACAGGCGAGAGACCGTACACATGTGATATATGTGGAGAAACATTTTCGGCTTCATCGAGAAAATCAGAACATATCCGTAAAATGCATAAAAGCACAGACATAGTTCTGAAGCAAGCTTGCCACTTGTGTCCAGCGAGGTTCCGCTTACCATACAGATTGAAGAAGCACCTAAAATCTGTTCACAATGACGATGGGGATGGGTCCGTACCGCAGTTTGAATGTAAGGTCTGGCTGGAAACCGAGCTACCGGCCGGTGTTTGCAGCCTCTGCACCAACAGCGCCACAGCGGCCTGGCAATTCAAAAACTTATGCCTCGAATCAGACAAACATTGGAGGAAAACTGTATTATTGCTGAACAAATTACAGGTTCAGCCGACGAGTACAGACAAAACTCTCTTCATAGGCTGTAATACGTTTATAAGGGATAATATTGAGAATAAACATCTAAGCGATGGCCTGGATAGACTGAATTTACTGATGGGACAAAAGAAACCAAAGAGAACGAAATATCAAGGAAGTCGGTGTAACGTTTACAAGTGTAAGGATTGCGGGAAGGACTTTTCTGTCCCTTATTTTTTGAACCACCACTTGCTGAGTACGAATAAGCGCGCCTGTAATTTGTGCGGGAAAATTCTGCCGAAGCAACGTCTCgccaaacatttgtataagAGTCATGGCAAATTGGTCGTCAGCTGTGATATCTGTGATAAGCTGTACGATGATCAGTTCCAGTTGGAACGCCATAAAGCAATGCTTCACGGGAAGAATTCATTTTCGTGTAATATATGCAAGAATGGATTTAAAAACGAGAGATCTGTCCGTGCGCACATGTATACGCATACTTTGTTTAATTGTACTTCATGTAACGCCAGCTTCGAGAATCGTAAGTGTTACACGTATCATACGCAGCGTTGTGACGGTTCGAAGCAAGCAGCGGAAGGTCATTACGAGTGTCACGATTGTGGCAACGTCTACACGAAAAAGCCATCGTTGAAGGTCCACATTGTGCAGAAACATTTGAACGTTTTGCCGTACGTTTGCCAGGTTTGTGGCAAACGTAGTTCGACCAAAAATCATCACAAGGCTCACGAGCAAATCCACAAAGCTAAGAGGAAAGTTTATCAATGCTTCTGCGGGGCGAAGATGTTGACGGAATTAGGATTTAGCATGCATCAAAGGATACACTCTGGTGAGAAACCGTACGAGTGTGATGTGTGCGGCGACAGGTTCTTGTCAGCTTCTAGGAGGTTAGATCATATCAAGAGGAAACATAGAAGCAAAGAATTCGCGCACGGCTGTAGTCACTGTGATGCTAGATTCTTGAAAGAAGAGAATTTGTTCCCAAATGGATTGTGCATATCCTGCACGAATGGGGCGGTCGCGTCGTACGAGTTCACATTCTTAGTTCGTAAATCGCAGAGGCTATGGTCGAACTGTATCAACTCCCTACAAATTCGTCCAACAGTGACCTCAGCGCACAAGTCACTATACGTCGTTCTAAAAGAtaacttattaattaaaactgttAATAATTTTGGCGGAGACGCTAAAGATCTATTCGATCACCTAACAAACACGTTTGTGAAGAGGAAGGTAATCACAGAAAGGAAGCCGAGACACCCGAGGGCGGGACCGGCGTGCAGTTGCACGGACTGTGGGAAAAATTTCATCAGCCCGTACTATTTGAATATGCACTTGAGGAACAGTGGCCAGAAGGATTCTTGCTGGCTGTGTGGCGCTATGTTCACGAGAGGAGCTGAGATGAAAGAGCATCTATCAAAAATTCACAAGATTAATATGGTTCAATGCACGGAATGCCCGTTACTGTTCAAAAGCGAGTTGGACAGGAAATTGCATGTCAAGAAATGCCACGGACCTGGCGCCTTGACGTGTAACGATTGTGGTAGAACATTCCAGAGAAAGGGCTCGTTTGAAGTACATTCGCAAATGCACGCAGTGAGAACTTGTAGAGCTTGCGGCTCGCAGTTCTCAAATCGAGGCTGTTACAGAGAACACAGGTCAAAATGTGAACCCAACGCCAAACCAGATTTGAAGACAATTCCAAGAAATAGGAGATCGAATGTACGCGACCCAGCAACGTTTACATGCGATTACTGCAATAAGACTTATCATTCCCGTTCGCAATTGAAGAATCACATCCTCTGGATACACATGGATATCCGGCCGCATCAGTGCCAGTGGTGCGGTAAGCGTTTTTACACACCAGCTCGATTGGCCGAACACACGGTAGTTCATACACGTGTACGGAATTTCGAGTGCGATATTTGTGGCGCGAAATTGGTGTCAAAAATGGCCGCCGTCTACCATAGACGAAGGCATACAGGCGAGCGGCCGTATGAGTGCGAAGATTGTGGTGAAAAGTTCATCTCCTCGTCTAGGAGATCAGAACACGCGAAACGTAGACACAATAAGGGCTCCCGTCTTCAATGTCCAGAATGTCACGCCAGTTTTGTAAGAAAGCATGAATTAAAGAAGCACATAGACAGAGTACATAATCCAGATAATCAGTTGgcagtgaaattaaaaattgacaAAACTTTTTCCTTAGCTCAAACGACCATGCTTTGA
- Protein Sequence
- MTRQVDVKALVSHVIRGDGVNRCRICMGDTSEGQVQLGDTVIMDGDRPVTLSELLESVTGIKMPVDGDLPSGVCPECSKCAINAAEFRMLCHHAVSQWEITIQLLQNLPLQRNNSKKTMFAIIDQSQMVIINDDTSDSFSISSAAQRLTEHLNPDQIKKESNVSCECPNCGKQFEYAQQLSHHLKESTDHKRACHICAKIMYRDDLPRHMKKVHKRNPYDCKKCPALLYSHNQYVRHLTKAHTRGACTCIECGRSFHSRNGYHAHVSIHRPKNCPSCDKLFKNQMCYVHHVKNCCNLDKNREDTHRTTKKVTVEVRNKSSNRPIKVGLRGSADKECICDHCGKKFAGKKFVAAHIQIVHMKNTHRPCVYCGKLLAAAHMTQHVKQHELDLSFTCEHCNVVLKTKLGYIQHLRLHTGERPYTCDICGETFSASSRKSEHIRKMHKSTDIVLKQACHLCPARFRLPYRLKKHLKSVHNDDGDGSVPQFECKVWLETELPAGVCSLCTNSATAAWQFKNLCLESDKHWRKTVLLLNKLQVQPTSTDKTLFIGCNTFIRDNIENKHLSDGLDRLNLLMGQKKPKRTKYQGSRCNVYKCKDCGKDFSVPYFLNHHLLSTNKRACNLCGKILPKQRLAKHLYKSHGKLVVSCDICDKLYDDQFQLERHKAMLHGKNSFSCNICKNGFKNERSVRAHMYTHTLFNCTSCNASFENRKCYTYHTQRCDGSKQAAEGHYECHDCGNVYTKKPSLKVHIVQKHLNVLPYVCQVCGKRSSTKNHHKAHEQIHKAKRKVYQCFCGAKMLTELGFSMHQRIHSGEKPYECDVCGDRFLSASRRLDHIKRKHRSKEFAHGCSHCDARFLKEENLFPNGLCISCTNGAVASYEFTFLVRKSQRLWSNCINSLQIRPTVTSAHKSLYVVLKDNLLIKTVNNFGGDAKDLFDHLTNTFVKRKVITERKPRHPRAGPACSCTDCGKNFISPYYLNMHLRNSGQKDSCWLCGAMFTRGAEMKEHLSKIHKINMVQCTECPLLFKSELDRKLHVKKCHGPGALTCNDCGRTFQRKGSFEVHSQMHAVRTCRACGSQFSNRGCYREHRSKCEPNAKPDLKTIPRNRRSNVRDPATFTCDYCNKTYHSRSQLKNHILWIHMDIRPHQCQWCGKRFYTPARLAEHTVVHTRVRNFECDICGAKLVSKMAAVYHRRRHTGERPYECEDCGEKFISSSRRSEHAKRRHNKGSRLQCPECHASFVRKHELKKHIDRVHNPDNQLAVKLKIDKTFSLAQTTML*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00985361;
- 90% Identity
- iTF_00985361;
- 80% Identity
- -