Math035880.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Mellicta athalia
Gene Symbol
-
Assembly
GCA_905220545.1
Location
HG992200.1:10723299-10728218[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.1 13 7.9 1.0 2 21 120 139 119 143 0.90
2 25 0.0023 0.29 13.0 2.1 1 23 193 216 193 216 0.93
3 25 1.3 1.6e+02 4.4 0.1 2 23 244 266 243 266 0.94
4 25 0.023 2.8 9.9 0.3 1 23 288 311 288 311 0.93
5 25 0.028 3.4 9.6 3.4 3 23 318 338 317 339 0.94
6 25 0.00038 0.047 15.5 1.3 1 23 344 367 344 367 0.95
7 25 0.0034 0.42 12.5 0.4 2 23 373 395 372 395 0.90
8 25 0.0022 0.27 13.1 3.8 1 23 399 422 399 422 0.97
9 25 0.0085 1.1 11.2 0.2 2 23 429 450 428 450 0.96
10 25 0.03 3.7 9.5 2.9 1 23 456 478 456 478 0.97
11 25 0.00069 0.085 14.7 1.6 1 23 513 535 513 535 0.98
12 25 0.088 11 8.1 0.0 2 23 563 585 562 585 0.91
13 25 0.009 1.1 11.2 2.3 2 23 606 628 605 628 0.94
14 25 0.0013 0.16 13.8 0.8 1 23 633 656 633 656 0.96
15 25 0.00051 0.062 15.1 0.2 1 23 661 684 661 684 0.97
16 25 0.042 5.2 9.1 3.2 1 23 686 709 686 709 0.97
17 25 0.0086 1.1 11.2 1.0 2 21 717 736 716 737 0.95
18 25 0.026 3.2 9.7 0.9 1 23 792 815 792 815 0.92
19 25 1.1e-05 0.0013 20.4 0.4 2 23 888 910 887 910 0.96
20 25 0.00037 0.046 15.5 0.4 3 23 917 938 915 938 0.92
21 25 0.0052 0.64 11.9 4.0 2 23 943 965 942 965 0.93
22 25 0.022 2.7 9.9 4.7 1 23 970 993 970 993 0.94
23 25 1.5e-05 0.0018 20.0 4.1 1 23 997 1020 997 1020 0.97
24 25 0.001 0.13 14.1 2.1 2 23 1027 1048 1026 1048 0.96
25 25 4.3e-06 0.00052 21.6 0.7 1 23 1054 1076 1054 1076 0.98

Sequence Information

Coding Sequence
ATGAGGCAACGTAATAGACTTGAGGGTTGTGCTAAAGTGGACAAATCAATATTATCTTGTTATATCCACTATGAAATTCTTCCTAATTTACAATCTTTGATAGTGTCGCACGGTTATGAAAGTTTGAAGGAACACACTAAAAGTCACGGTCTGTGTTCAGACAAAGATAGAGCATTGAGATTAGTTAAATCACCCGACGTGGAAGTAAAAGTTGATGTGTCAAGAATTACTTGCAACTTGTGTTATAAAGAATTTCTAAATTTAGAGGAAATTGTCTTTCACTTAGTGGATAGACATAAACTGCCTTATAACAGAAATGTTGATTTAACGCTAGCACCATACAGATTATCAAATTTGAGCTGCCTTTTATGTgatcaaaaatttaattatctcAGAAAATTGATAAACCATCAAAGCTTTCTCACCCATGCACTAAAATGTTTAAACAATTGCAAGGAATCTATAGAAACAGTAAGGCTTGCAGAGAAAAAGCCGCGTGTAACACAAATTAGAGAGAATATTGCTTCTATCTTTAATATGTCCACCGCTATTCCCTTCAAGTATTTCATGAGCAAGTTTAGATGTTTTTACTGTCCTAAAGACTTCAATGAGTGCGATGACCTTAAACAGCATACGGTTATCGAACACCCCTTATGCGACACCAAATTGAAATCTATGAAGTTACGTCACAGACATGACGGCGTTATCAAAGTGGACACATCGAATTTATCATGCAAAATATGCTTTGAAAATATACAAGATTTAGAATCTCTAATAGACCACTTAAACAACGAACATAAAGTATATTTTGATAAATCTTTATCAGGCAACTTGCAatcttataaattaataaaagataattttCCTTGTCCATTCTGTGGGGATGTTTTTAGGTATTTCCGAAGTCTGTTGAACCACGTCGTCAAATTGCATTcggataataaaaatatatgtatgcaCTGCGGAATGGCGTTTAGAAACGCTCCGAATTTGCGATGTCATATCGCTCGCCATCACAAAGCAGCTAATTTCAAATGTGCTAAGTGTGATTTAAGTTTCTTTTCGAATTATTACCTCCAAACTCATTTGGGACGAGTACACGGGACCAAAGTCGTTGAGTGCGTCGGATGTCATGAAAAGTTTACTTCAGCATATGAGATGCAAAGGCACAAGATAGACGTCCATAGTTCTGGACACGAGTGCTCCTATTGTCATAAATTGTTTACTGGGAAGTCTTCCGTCGTCGACCATATTAGAAGGACACATTTAAAGGAGAAAAACGTGGTATGCACGGTGTGCCAAGAGAAATTCTTTGATGGACAGAGTCTGAAGGTACATATGGTAAAACATTATGGAGAAAGAAATTTTCACTGTGATTTATGCGGGAAGAAATTTCTCTGGAAGAAAAATCTTAGAGAACACATGTCTTCGCACAATGAAAGGCCGTCCGACCAATATATGTCTAAGCGGAGGAGGGAAAACTTGGAAACTCTGTTCGACAACTCATCAATAATTCCGTTCAAATGGAGCAATAAGtatatttgtttctattgcgGCCAGAAATTCAAGGAATATCCATCGCTCAGAGACCATACAAAGTCCCACGGTCTTTGTAGTATAAGCAAATACGCAATGAAAGTTATTCGAGGAAATAACGTCGAAATAAAGATAGATGTGTCTGAAATTCAGTGCGAGATATGTCGCGAACCTTTTactagtttaaatgaaatcataGATCACTTAATAGGTGAACATGAGTTGAAGTACGATAAAAGTATCTCAACAACCTTTGATGAATATAGATTATCGGACTGCTGTTGTCAGTTATGCGGTCAAGAGTTTTCCTATTTTGGTTTTCTAATCATTCATATGAATGTAGAACATCCGCAGAACACTTTTATATGCGACAATTGTGGTGAAACTTTCAATAAAATGAGAGATGTGAAGATGCATATTCGCTATTATCATAGAGAAGGTGGTTATCCTTGCGATGAATGTGCAGAAGTATTTGAAAACTATGCACTtttaagaaaacataaaaaaagggTCCATTTCCATAGATGTAAGATGTGCAAGTTAGATTTCCCTTCGTACGCATTTTTTAGGAAGCATGTCAAGTCCGGTCATCCCGATGACGGTTGCTACACGAAATGCCCGTTTTGTTCCAAAAAATGCCAAACCTCTCCAGAATTAAATGAACACATTAGGATATGTAAACTAAAacgacaaaataaaattttaaagtctACGATATCGTCTACTGATGATAATCGACTCCAACCAAATAAGCATCAAAATGTGTTCCAAATTAGAAGGAATATCCAATGTGTTTTAAATATGTCTACAGCTGTAccttttaaatttttcgttaaatttTCATGCTTCTACTGTTCGAAGTATTTCGTAGAATTTGACGAACTCAAAGAGCACGTTAGCGCCAATCACCCTTTCTGTGATATAAAAGAGAAATATATGAGGGATTGTAAAGGGGGAAGAATAGTGGTGAAAATTGACGTATCTTCGTTAGCTTGCAGAGTTTGCCTCGAACCTATGGAAAATTTGCAATCCCTTATCGACCATCTCATATCGAAACACGCGGCAGATTACGATAAATCAATGACTATGTCCTTCGAACCCTTTAAGATAAATAAAGACAATATACCCTGTCCGACTTGTTCCAAAGTTTTCAGATACTTTAGCACCCTTTTGCGGCATATGAACTCTGAGCATACTAACAATAACATTATATGTGATTTCTGCGGCCGAAGTTTTAGGGATATACCTAATTTAAAAGTTCATCTAACACACGCGCATACTGGGTCGTGTGAGTGCGAAATATGTGGTACGAAGTTCAAAAATCAGTGGTGTCTAGGTCGGCATAAGGCTAAGTCGCACGACGTTAAAGATTACCAGTGCACAAAATGTCCCGAACGCTTCCAATCCCATTATCATAAACAGAAGCATCTGATAGAAGTTCACGATATCGGTCATAGGTGTACGTATTGCGGCAAAATGTTTACAAGGAATTCTTTCATGAAGGATCACGTACGTAGGATACATTTGAAAGAGAAGAATGTGACGTGTACAGTGTGCGATGAGAAATTCTTCGATAATTACTGTTTGAAGTTGCACATGGTTAAACATAAGGGCGAGAGGAACTTTACATGTGAGGTTTGCGGAAAAGCGTTCCTTAGGCGAAGCAATTTGAAGGTGCATAAACGAATACACAAGAAGCATGAGCATGAATAA
Protein Sequence
MRQRNRLEGCAKVDKSILSCYIHYEILPNLQSLIVSHGYESLKEHTKSHGLCSDKDRALRLVKSPDVEVKVDVSRITCNLCYKEFLNLEEIVFHLVDRHKLPYNRNVDLTLAPYRLSNLSCLLCDQKFNYLRKLINHQSFLTHALKCLNNCKESIETVRLAEKKPRVTQIRENIASIFNMSTAIPFKYFMSKFRCFYCPKDFNECDDLKQHTVIEHPLCDTKLKSMKLRHRHDGVIKVDTSNLSCKICFENIQDLESLIDHLNNEHKVYFDKSLSGNLQSYKLIKDNFPCPFCGDVFRYFRSLLNHVVKLHSDNKNICMHCGMAFRNAPNLRCHIARHHKAANFKCAKCDLSFFSNYYLQTHLGRVHGTKVVECVGCHEKFTSAYEMQRHKIDVHSSGHECSYCHKLFTGKSSVVDHIRRTHLKEKNVVCTVCQEKFFDGQSLKVHMVKHYGERNFHCDLCGKKFLWKKNLREHMSSHNERPSDQYMSKRRRENLETLFDNSSIIPFKWSNKYICFYCGQKFKEYPSLRDHTKSHGLCSISKYAMKVIRGNNVEIKIDVSEIQCEICREPFTSLNEIIDHLIGEHELKYDKSISTTFDEYRLSDCCCQLCGQEFSYFGFLIIHMNVEHPQNTFICDNCGETFNKMRDVKMHIRYYHREGGYPCDECAEVFENYALLRKHKKRVHFHRCKMCKLDFPSYAFFRKHVKSGHPDDGCYTKCPFCSKKCQTSPELNEHIRICKLKRQNKILKSTISSTDDNRLQPNKHQNVFQIRRNIQCVLNMSTAVPFKFFVKFSCFYCSKYFVEFDELKEHVSANHPFCDIKEKYMRDCKGGRIVVKIDVSSLACRVCLEPMENLQSLIDHLISKHAADYDKSMTMSFEPFKINKDNIPCPTCSKVFRYFSTLLRHMNSEHTNNNIICDFCGRSFRDIPNLKVHLTHAHTGSCECEICGTKFKNQWCLGRHKAKSHDVKDYQCTKCPERFQSHYHKQKHLIEVHDIGHRCTYCGKMFTRNSFMKDHVRRIHLKEKNVTCTVCDEKFFDNYCLKLHMVKHKGERNFTCEVCGKAFLRRSNLKVHKRIHKKHEHE*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00985352;
90% Identity
-
80% Identity
-