Mcix000063.1
Basic Information
- Insect
- Melitaea cinxia
- Gene Symbol
- -
- Assembly
- GCA_905220565.1
- Location
- HG992236.1:9037449-9042171[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 4.5 4.8e+02 2.3 0.4 10 23 46 59 43 59 0.90 2 26 0.08 8.5 7.8 0.4 2 21 130 149 129 153 0.90 3 26 0.00079 0.085 14.1 2.0 1 23 203 226 203 226 0.96 4 26 1 1.1e+02 4.3 0.1 2 23 254 276 253 276 0.94 5 26 0.00067 0.071 14.4 0.3 1 23 298 321 298 321 0.93 6 26 6.9e-05 0.0074 17.5 1.5 3 23 328 348 327 349 0.94 7 26 0.00031 0.033 15.4 0.9 1 23 354 377 354 377 0.95 8 26 0.0026 0.28 12.5 0.4 2 23 383 405 382 405 0.90 9 26 0.0017 0.18 13.1 3.8 1 23 409 432 409 432 0.97 10 26 0.0058 0.62 11.4 1.1 2 23 439 460 438 460 0.96 11 26 0.033 3.5 9.0 3.1 1 23 466 488 466 488 0.97 12 26 0.0016 0.17 13.2 2.2 1 23 523 545 523 545 0.96 13 26 0.0074 0.79 11.1 0.0 2 23 573 595 572 595 0.91 14 26 0.0091 0.98 10.8 2.9 2 23 616 638 615 638 0.94 15 26 8.8e-05 0.0094 17.1 0.6 1 23 643 666 643 666 0.96 16 26 0.00084 0.09 14.0 0.3 1 23 671 694 671 694 0.97 17 26 0.00011 0.012 16.8 2.1 2 23 697 719 696 719 0.96 18 26 2.8 3e+02 3.0 0.4 2 22 727 747 726 747 0.92 19 26 0.02 2.1 9.7 0.9 1 23 800 823 800 823 0.92 20 26 2.7e-05 0.0029 18.7 0.3 2 23 896 918 895 918 0.96 21 26 8.3e-05 0.0088 17.2 0.5 3 23 925 946 923 946 0.91 22 26 0.001 0.11 13.8 3.1 2 23 951 973 950 973 0.95 23 26 0.00081 0.087 14.1 3.7 1 23 978 1001 978 1001 0.98 24 26 5e-06 0.00053 21.1 5.2 1 23 1005 1028 1005 1028 0.97 25 26 0.00029 0.031 15.5 1.1 2 23 1035 1056 1034 1056 0.96 26 26 8.1e-06 0.00087 20.4 0.8 1 23 1062 1084 1062 1084 0.98
Sequence Information
- Coding Sequence
- ATGCTACGTAATAGAAATGAGGGTTGTGCTAAAGTGGACAAGTCAATATTATCTTGTAAAAACCACTATGAATTTCTTCCTAATTTACAATTTTTGATAGACTATATAACATTGAATAAGAAAGCATCGCACGGTTACAAAGATTATGAAAATTTGAAGGAACACACTAAAAATCACGGTCTGTGTTCAGACAAAGATCGAGCGTTGAGATTAGTTAAATCAGCTGACGTGGAAGTAAAAGTTGATGTGTCAAGAATTACTTGCAATTTATGTTATAAAGAATTTCTAAATTTAGAGGAAATTGTCTTTCACTTAGTGGATAGACATAAACTGCCTTATGACAGAAATGTTGATTTAGCGCTAGCACCATACAGATTATCAAATTTGAGCTGCCTTCTATGCGATCAAAAATTTAATTATCTTAGAAAATTGATAGTCCATCAAAGCTTTCTCGCCCATGCACTAAAATGTTTAGATAATTGCAAGGGATCTATAGAAACAGTAAGGCTTGCAGAGAAAAAGCCGTGTGTAACACAAATTAGAGAGAATATAGCTTCTATCTTTAACATGTCCACTGCTGTTCCCTTCAAGTATTTCATGAGCAAGTTTAGATGTTTTTACTGTCCTAAAGACTTCAATGAGTGCGATGACCTTAAACAGCATACGATAATCGAACATCCCTTATGCGACACCAAATTGAAATCTATGAAGCTACGTCACAGACATGACGGCGTTATCAAAGTAGACACTTCGAACTTATCATGCAAAATATGCTTTGAAAATATACAAGATTTAGAATCTCTAATAGACCACTTAAACAACGAACATAAAATATATTTTGATAAATCTTTATCCGGCAACTTGCAGTCTTATAAACTAATAAAAGATAATTTTCCTTGTCCATTCTGTGGGGAAGTTTTTAGGTATTTCCGAACTCTCTTGAACCATGTCGTCAAATTGCATTCGGATAATAAAAATATATGTATGCACTGCGGAATGGCGTTTAGGAACGCTCCGAATTTGCGAACTCATATCGCTCGCCATCATAAAGCAGCTAATTTCAAATGTGCTATGTGTGATTTAAGTTTCTTTTCGAATTACTACCTCCAAACTCATTTGGGACGGGTACACGGAACCAAAGTTGTGGAGTGCGTCGGATGTCATGAAAAGTTTACTTCAGCGTATGAGATGCAAAGGCACAAGATAGACGTCCATAGTTCTGGTCACGAGTGCTCCTATTGCCATAAATTGTTTACTGGAAAGTCTTCCGTCGTTGACCATATAAGAAGGACACATTTAAAGGAGAAAAACATGGTATGCACGGTGTGCCATGAGAAATTCTTCGATGGACAGAGTCTGAAGGTGCATATGGTGAAACATTATGGAGAAAGAAATTTTCATTGTGATTTATGCGGGAAGAAATTTCTCTGGAAGAAAAATCTTAGAGAACATATGACTTCGCACAATGAAAGGCCGTACGACCAATATATCTATAAGCAGAGGAGGGAAAACTTGCAAATTCTGTTCAACAACTCATCAATAATTCCGTTCAAATGGAGCAGTAGGTATCTGTGTTTCTATTGCGGCCAGAAGTTCAAGGAATATCCAACACTCAGAAATCATACAAAGTCCCACGGTCCTTGTAGTACAAGCGATTACGCATTGAAATTTATTAGAGGACATAACATCGAAATAAAGATAGATGTGTCTGAAATTCAGTGCGAAATATGTAACGAACCTTTTAGTAGTTCTAATGAAATCATAGATCACTTAATAGATGAACATGAGTTGAAGTACGATAAAAGTATTTGTATACCATTTGAAGAATATAGATTATCGGACTGCTGTTGTCAGTTATGCGGTCAAGAGTTTTCCTATTTTGGTTTTCTAATCAGTCATATGAATATAGAACATCCGCAGAACAGTTTTATATGTGACAATTGTGGTGAAGTGTTCAATAAGATGAGAGATTTGAAGATGCATATTCGCTATTATCATAGAGAAGGGGGTTATCCTTGCGATGAATGTGCAGAAGTATTTGAAACTTATATTCTTTTAAGGAAACATAGAAATAGGTTCCATTTCCAAAGATGTAAGATGTGCGATTTACATTTCTCTTCGTACGCACTTCTGAGGAAGCATATCAAGTCCGGTCATCCTGATGACGGTTGCTACACGAAATGCCCGCTTTGTTCCGAAAAATGCTTAACCTCTCCAGAATTAGATGAACACATTAGGAAATGTAAACTAAAACGACAAAATAAAATTTTAAAGGCTACCATCCCTGATGATAATATACTACAACCAAATAAGAAGCAAAATGTTTATCAAATTAGAAGGAATATCCAATGTGTTTTAAACATGTCTACAGCTGTACCTTTTAAGTTCTTCGTTAAATTCTCATGCTTCTACTGTTCAAAATATTTCGTAGAATTTGACGAACTCAAAGAGCACGTTAGCGCCAATCACCCCTTCTGTGATATAAAACAGAAATATATGAGGGATTGTAAAGGGGGAAGAATAGCAGTGAAAATTGACGTATCTTCGTTAGCTTGTAAACTTTGCCTTCAACCTATGGGAAATGTAGAATCCCTTATCGACCATCTCATATCGAAACATGAGGCAGATTACGATAAATCAATGACTGTGTGTTTCGAACCCTTTAAGATAAAAAAAGACAAAATACCCTGTCCAACGTGTTCCAAAGTTTTCAGATACTTTGGCACCCTTTTGCGGCACATGAACTCTGAGCATAGTACCAATAACATTATATGTGATTTCTGTGGCCGAAGTTTTAAGAGTCTAGCTAATTTAAAAGTTCATGTAACACACGCACATACTGGGTCGTGTGAGTGCGAAATATGTGGTACGAAGTATAAAAATCAGTGGTGTCTAGGTCGACATATGGCTAAATCGCATAACGTCAAAGATTTCCAGTGCACAAAATGTCCCGAACGTTTTCAATCCCAATATCATAAACAGAAGCATCTAATAACAGTTCACGATATCGGTCATAAGTGTACGTATTGTGGCAAAATGTTTACGAGGAATTCTTTCATGAAGGATCACATACGTAGGACCCATTTGAAAGAGAAGGATGTGCCGTGTACAGTGTGTGGTGAGAAATTCTTCGATAATTACTGTTTGAAGTTGCATATGGTGAAACATAAGGGTGAGAGGAACTTCACTTGTGAGGTTTGCGGTAAAGCGTTCCTTAGGCGAAGCAATTTGAAAGTGCATAAACAAATGCACAAGAAGCATGGGCATGCGTAA
- Protein Sequence
- MLRNRNEGCAKVDKSILSCKNHYEFLPNLQFLIDYITLNKKASHGYKDYENLKEHTKNHGLCSDKDRALRLVKSADVEVKVDVSRITCNLCYKEFLNLEEIVFHLVDRHKLPYDRNVDLALAPYRLSNLSCLLCDQKFNYLRKLIVHQSFLAHALKCLDNCKGSIETVRLAEKKPCVTQIRENIASIFNMSTAVPFKYFMSKFRCFYCPKDFNECDDLKQHTIIEHPLCDTKLKSMKLRHRHDGVIKVDTSNLSCKICFENIQDLESLIDHLNNEHKIYFDKSLSGNLQSYKLIKDNFPCPFCGEVFRYFRTLLNHVVKLHSDNKNICMHCGMAFRNAPNLRTHIARHHKAANFKCAMCDLSFFSNYYLQTHLGRVHGTKVVECVGCHEKFTSAYEMQRHKIDVHSSGHECSYCHKLFTGKSSVVDHIRRTHLKEKNMVCTVCHEKFFDGQSLKVHMVKHYGERNFHCDLCGKKFLWKKNLREHMTSHNERPYDQYIYKQRRENLQILFNNSSIIPFKWSSRYLCFYCGQKFKEYPTLRNHTKSHGPCSTSDYALKFIRGHNIEIKIDVSEIQCEICNEPFSSSNEIIDHLIDEHELKYDKSICIPFEEYRLSDCCCQLCGQEFSYFGFLISHMNIEHPQNSFICDNCGEVFNKMRDLKMHIRYYHREGGYPCDECAEVFETYILLRKHRNRFHFQRCKMCDLHFSSYALLRKHIKSGHPDDGCYTKCPLCSEKCLTSPELDEHIRKCKLKRQNKILKATIPDDNILQPNKKQNVYQIRRNIQCVLNMSTAVPFKFFVKFSCFYCSKYFVEFDELKEHVSANHPFCDIKQKYMRDCKGGRIAVKIDVSSLACKLCLQPMGNVESLIDHLISKHEADYDKSMTVCFEPFKIKKDKIPCPTCSKVFRYFGTLLRHMNSEHSTNNIICDFCGRSFKSLANLKVHVTHAHTGSCECEICGTKYKNQWCLGRHMAKSHNVKDFQCTKCPERFQSQYHKQKHLITVHDIGHKCTYCGKMFTRNSFMKDHIRRTHLKEKDVPCTVCGEKFFDNYCLKLHMVKHKGERNFTCEVCGKAFLRRSNLKVHKQMHKKHGHA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00986468;
- 90% Identity
- -
- 80% Identity
- -