Math003566.1
Basic Information
- Insect
- Mellicta athalia
- Gene Symbol
- Hr39
- Assembly
- GCA_905220545.1
- Location
- HG992177.1:4521994-4544682[-]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.4 9.6e+03 -3.0 4.2 76 160 98 206 53 233 0.47 2 4 2 4.7e+04 -8.5 11.1 73 160 205 304 127 332 0.45 3 4 5.2e-08 0.0012 19.7 0.1 1 20 439 458 439 477 0.89 4 4 4.2e-65 9.9e-61 207.7 0.0 155 408 495 757 469 757 0.83
Sequence Information
- Coding Sequence
- ATGAACACCGCGATGTCTAGCGAAGAAGCAGTGAAGGTGGAGGGAGGACATGTCTCCGTCACAACTATCAGCATGTCCGGTCCAGAAACAAGCAACGGTCAGTTCTCATACAGCTCCAGTGGTGTACGTATCAGCGTGTCTTCAGAACCTCACGACGAGGACTCCACTGACGCTGAAATTTCCAAAATAGACTTCTCACAACATCAGTATGAGGTAAACATGAGAAACAAAAAGAAACGTTCGTCAAGTGGACAGTACGAGAATGCAGAACAAGAAAGGCCTATGTCCTGGGAGGGTGAACTGTCTGACTCCGAAATGGTTATCGATACTAGTGTCAACAATGATGAAAATAGCAGCTCCCTTGATCTGCAGTCCTCGCGGGATTCCATAGACACTCTCCGTAACGTGACGATTAAGACTGAACCACTGAAAACAGAATCGTTCCAAAGTTTGGACGACCAACGGGTTTTGGATCTCAAATATTCTGTTCCCCTGCAATCACATCAGCGGAGTCTCAGTATGAATAGGATATCGGTGCTAACGGATAATGCTCCAATGTCCCTTCCGAGGCGGCCATCATCGCCTCAAAGCAGCGCTAAGTCTACTTTATCCGACCAGTACGACACGTCGCCGCTTATACAGAACCCCGCAGTAGAAGTTCAGAATTTGACTATTAAGAAGGAAACCCAATTATCTGAGTTAAAATGCGAGCCGACAGTAGGTATGGACAAGTTGCTTGGGCTCCACGGGTCACCTCTTCTAGGAAGACTGCCTAGAGTACAATCCAGTGCCAGTACAGATTCCGCCGTACATTCTATGTACACGCATAGCGTATACAGTAGCCCATCAGCCAGCCCGCGCCCCTCTCGTCACTACACGCCGTCTCTTTCACGCAACAACAGCGACGCCTCACACTCCTCCTGCTACTCCTATAGCTCAGAGTTCTCGCCCACCCATTCACCAGTTCAGGGTCGTCATCCCCACGTTGTTTATCGAGAGCCAACTGTCTTCCCTGCGTCGCCAGCGCACGATGAAGATACCGACACCACTGATGACCGCCTTCATCATCATCAGGGTATCAGCAGACAACAGCTGATTAACAGccCGTGTCCAATTTGCGGAGATAAGATAAGCGGTTTTCATTACGGAATATTTTCGTGCGAATCTTGCAAGGGTTTCTTTAAACGGACCGTACAAAACCGTAAGAACTACATGTGTCTCAGAGGGGGGAACTGTCCTGTTACTGTTGCTACTAGGAAGAAATGTCCCGCTTGCAGATTTGACAAGTGCTTGGGATGTGGAATGAAACTTGaagCGATCCGCGAGGACCGCACGCGCGGCGGCCGCTCCACGTACCAGTGCTCGTACTCGCTGTCGGGCGCCGCGTCCACCGGCTCGCTGCTGTCCGCGCACGCGCCCGCCACGCTGCGCCACGCCTCCAGCCTCACTTGCGTAAATGGCCAAGTGTCGTACAATAGTCGAGGAGAATCGAGCAACAGCCGACTCACTCCCGACATACCGCCATTATTACagGAAATAATGGACGTGGAACACTTATGGCAATACAATGAGTCGGAGCTCAGTCGAATGAGTAAATCTACGGGCAGCCCGTCCGCTAACCCGTTGCTGGCGGCAAGTGGTATCACAGCCCAGAACTCTAGCGCCGACTTCCTCGCAGACTTGTGCAACATCGCTGACCATAGGCTATATAAGATCGTCAAGTGGTGCAAGAGTTTGCCTCTTTTTAAGAATATCTCGATCGACGACCAGATCTGCTTGCTGATCAACAGCTGGTGCGAGCTGCTGGTGCTGTCGTGCTGCTACCGCGGCGTCAGCACGCCGGGCGAGGTGCGCGTAGGCGGCGGCCGGGGCATCACGCTGCACCAGAGCGCCAAatatGGTCTAACGCCATGTATCGAACGAATGTTGAGTTTCACGGATCACTTAAGAAGGCTACGAGTGGACCGGTACGAGTACGTTGCGCTTAAAGTTATCGTACTACTCACTTCAGATGCGCCGGAATTGCGTGAAGCGGAGAAAGTGCGAGCGTCCCAAGAGAAAGCGCTTGCAGCGCTGCAAGCGTACACCGCGACACACTCGCCCGACACTCCCGCTAAGTTCGGCGAACTGTTGCTTCGTATACCGGAGTTGCAGCGGACTTGCCAGtttttcatgcaagtcggaAAGGAGATGTTAAATCCAGCCAACAAAGGCAAAGATGGCGAAGGTCCAAGCTTCAATCTTCTCATGGAACTGTTGAGAGGCGATCACTGA
- Protein Sequence
- MNTAMSSEEAVKVEGGHVSVTTISMSGPETSNGQFSYSSSGVRISVSSEPHDEDSTDAEISKIDFSQHQYEVNMRNKKKRSSSGQYENAEQERPMSWEGELSDSEMVIDTSVNNDENSSSLDLQSSRDSIDTLRNVTIKTEPLKTESFQSLDDQRVLDLKYSVPLQSHQRSLSMNRISVLTDNAPMSLPRRPSSPQSSAKSTLSDQYDTSPLIQNPAVEVQNLTIKKETQLSELKCEPTVGMDKLLGLHGSPLLGRLPRVQSSASTDSAVHSMYTHSVYSSPSASPRPSRHYTPSLSRNNSDASHSSCYSYSSEFSPTHSPVQGRHPHVVYREPTVFPASPAHDEDTDTTDDRLHHHQGISRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYMCLRGGNCPVTVATRKKCPACRFDKCLGCGMKLEAIREDRTRGGRSTYQCSYSLSGAASTGSLLSAHAPATLRHASSLTCVNGQVSYNSRGESSNSRLTPDIPPLLQEIMDVEHLWQYNESELSRMSKSTGSPSANPLLAASGITAQNSSADFLADLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLVLSCCYRGVSTPGEVRVGGGRGITLHQSAKYGLTPCIERMLSFTDHLRRLRVDRYEYVALKVIVLLTSDAPELREAEKVRASQEKALAALQAYTATHSPDTPAKFGELLLRIPELQRTCQFFMQVGKEMLNPANKGKDGEGPSFNLLMELLRGDH*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00985246;
- 90% Identity
- iTF_01018623;
- 80% Identity
- iTF_00986338;