Basic Information

Insect: Melitaea cinxia
Gene Symbol: -
Assembly: GCA_905220565.1
Location: HG992236.1:8723197-8727538[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 2.1 2.2e+02 3.4 0.5 2 23 96 118 95 118 0.94

2 17 0.0052 0.55 11.6 0.9 1 23 141 163 141 163 0.98

3 17 2.5 2.7e+02 3.1 0.5 2 23 168 189 167 189 0.78

4 17 0.0067 0.71 11.2 0.6 1 19 194 212 194 215 0.96

5 17 0.13 13 7.2 4.7 2 23 227 249 226 249 0.95

6 17 0.0074 0.79 11.1 2.4 1 23 255 278 255 278 0.96

7 17 6.7e-05 0.0071 17.5 2.7 1 23 282 304 282 304 0.98

8 17 0.57 61 5.1 2.8 1 23 349 371 349 371 0.97

9 17 0.013 1.4 10.3 0.1 2 23 399 421 398 421 0.95

10 17 0.00011 0.012 16.8 4.1 1 23 444 466 444 466 0.98

11 17 0.055 5.9 8.3 0.3 2 23 471 492 471 492 0.96

12 17 0.0005 0.053 14.8 0.8 1 23 497 520 497 520 0.92

13 17 3.6 3.8e+02 2.6 6.3 2 23 530 552 530 552 0.95

14 17 0.00033 0.036 15.3 2.7 1 23 558 581 558 581 0.94

15 17 1.8e-06 0.00019 22.4 1.4 2 23 586 607 585 607 0.96

16 17 0.00044 0.047 14.9 5.2 1 23 613 635 613 635 0.97

17 17 6.2e-05 0.0067 17.6 1.6 1 23 641 664 641 664 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	2.1	2.2e+02	3.4	0.5	2	23	96	118	95	118	0.94
2	17	0.0052	0.55	11.6	0.9	1	23	141	163	141	163	0.98
3	17	2.5	2.7e+02	3.1	0.5	2	23	168	189	167	189	0.78
4	17	0.0067	0.71	11.2	0.6	1	19	194	212	194	215	0.96
5	17	0.13	13	7.2	4.7	2	23	227	249	226	249	0.95
6	17	0.0074	0.79	11.1	2.4	1	23	255	278	255	278	0.96
7	17	6.7e-05	0.0071	17.5	2.7	1	23	282	304	282	304	0.98
8	17	0.57	61	5.1	2.8	1	23	349	371	349	371	0.97
9	17	0.013	1.4	10.3	0.1	2	23	399	421	398	421	0.95
10	17	0.00011	0.012	16.8	4.1	1	23	444	466	444	466	0.98
11	17	0.055	5.9	8.3	0.3	2	23	471	492	471	492	0.96
12	17	0.0005	0.053	14.8	0.8	1	23	497	520	497	520	0.92
13	17	3.6	3.8e+02	2.6	6.3	2	23	530	552	530	552	0.95
14	17	0.00033	0.036	15.3	2.7	1	23	558	581	558	581	0.94
15	17	1.8e-06	0.00019	22.4	1.4	2	23	586	607	585	607	0.96
16	17	0.00044	0.047	14.9	5.2	1	23	613	635	613	635	0.97
17	17	6.2e-05	0.0067	17.6	1.6	1	23	641	664	641	664	0.97

Sequence Information

Coding Sequence: ATGTCAAGGAATATTCGCGAGAACATGGGAGATGGTTTAATACAAAGTTTATACCGCACATTTCGACTTCAAACATTGTATGGAAAAGACCCATATATGTGCCAGGAGTATGAAGATGCTCAGGATGTCAGCCCGTACGATCTAGAAAAACTTGAGAAAATTTTAGAAAAAATTAATCCTTTACTAGAACATACTTCGACACACGAAGTTATAGATGAAGCGATAATTTTAGAAAAATATGTACCAAAAGGAAAAAGAACGTTACAAGTGGATATTTCAAAATTACAATGTCGGCTGTGTGACCAACCTTATCTAAATTTAAACAAGATACGCAATCATTTAAAATCGGAACATGAGAAGGAATTCGCGCCAGTCGGTAATGGCATGACAGAATATATTATGGAGGCTCAAAATGGTTCATTTATATGTCACATGTGCGACATGAGCTTACCTTCGTTCCCGCTTTATAACTCTCACATGAATAGCCACGTTGGAAAAGTTGTCTGCGATTTTTGCGGAGCTGGATTCCTAAATCAGCACATCTTAAGGACACACAAAGCATCGCATATAACTAAAGAATACCGTTGCAAGGAATGTGATCGCGTTTTCCTCAAAAAGACCCAATTGAAATATCACGATGATATTATTCACAAAGGAAAAGATAGAGTTAGGCCAAAGAAATGTCACCTTTGTCCACAAACGTTTAAGGAGCATTATAGTAAAATGGTGCACCTTAAGCAAGTTCACGGAATAGTAAAGAATTTCTCGTGTCACGTCTGTAAATCGGTTTTCGGCACGCGGCGCGCTCTGACCGAACACACGACCAAGAGTCACACCGAGAAGTACAAATGTAAAGTGTGCTCTAAATGCTTTGGGGTAGAGTCTAAATTGAAACTGCATTTGCGTGGACACACCGTGCCGCCTCCTAGAGATCTTCCCACAAGTAGTAAATGGTCCATGACGCTGGCTGAGAGAATAAACGCGGCTTATTTATTAAAAAATACGACTGTAACTCCATTCACATATTTATTGTTTCCTAGCTCCTATAAATGTTTGTATTGTGAGGAAAAATATTTTGAAATTCATTATTTACTCGAACATTCCAGAAATCACGTAGTTCCTAGCCACGATAAGATTCTTAAAGACATATTAAAGAAAGGCAAGAAAAAAATTAAAGTTGACATTTCGAATCTGAAATGCAGGTTGTGCGATCAACCATTTCCAAGCTTAGAAGATATTCAGACACATTTGGGAACTATACATAGTATAAGTTTCATAAATGCCGGTAATGGAATGATCGCCTTTAATTTGGAGACGAATAATGATCTATTCACTTGCCATATTTGTACCAAAACATTTCAAAGTTTTTTCCTCCTAAATAAGCATATAAGCGTGCACTACAGTAACGCAGTTTGCGATTCCTGTGGTAAAGGATTTCTATCATACCAAAGATTAATGACGCATATGGAGAGCCATCGCAACGGTACATATCCTTGCGAAAAATGCAAGAAAGTTTTCCCAAGTATATCCAAATTGAAGTATCACAATGACAAAATCCACGGCACTTTAGGTAAAGTTAAGTTAGCCAAATGCCACAAATGTTTAGCCCGATTTGAACACCATTACGAAAAGATTAAACATTTGAAGGAAATTCATGGAGTATCATTTACTTTTACATGCGATACTTGTAATTTGGTGTTCAAAACTCGGCATTCATTAAACATGCATGTAGTCAAGTATCATACTCAGAATATTGTTTGTGATATTTGTAGGAAAACTTTTTCAGAGCGGTACCATTTGAGGAAGCATATGGCTATTCATAGTCATGAAAGAAATTTCGTCTGTCCGCTGTGTAAAAAGTGTTATAGATACGAAAAGACTTTAAAGCAACATTTAAAATTCCACAATCCAGATTGGAAGTTTTCTTGCTCCATCTGTTGGATGAGTTTTTCTAATAAAATTGATTATAAGAGACACAAATCAACAATGCATTTATAG
Protein Sequence: MSRNIRENMGDGLIQSLYRTFRLQTLYGKDPYMCQEYEDAQDVSPYDLEKLEKILEKINPLLEHTSTHEVIDEAIILEKYVPKGKRTLQVDISKLQCRLCDQPYLNLNKIRNHLKSEHEKEFAPVGNGMTEYIMEAQNGSFICHMCDMSLPSFPLYNSHMNSHVGKVVCDFCGAGFLNQHILRTHKASHITKEYRCKECDRVFLKKTQLKYHDDIIHKGKDRVRPKKCHLCPQTFKEHYSKMVHLKQVHGIVKNFSCHVCKSVFGTRRALTEHTTKSHTEKYKCKVCSKCFGVESKLKLHLRGHTVPPPRDLPTSSKWSMTLAERINAAYLLKNTTVTPFTYLLFPSSYKCLYCEEKYFEIHYLLEHSRNHVVPSHDKILKDILKKGKKKIKVDISNLKCRLCDQPFPSLEDIQTHLGTIHSISFINAGNGMIAFNLETNNDLFTCHICTKTFQSFFLLNKHISVHYSNAVCDSCGKGFLSYQRLMTHMESHRNGTYPCEKCKKVFPSISKLKYHNDKIHGTLGKVKLAKCHKCLARFEHHYEKIKHLKEIHGVSFTFTCDTCNLVFKTRHSLNMHVVKYHTQNIVCDICRKTFSERYHLRKHMAIHSHERNFVCPLCKKCYRYEKTLKQHLKFHNPDWKFSCSICWMSFSNKIDYKRHKSTMHL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00986504;
90% Identity: iTF_00986504;
80% Identity: -