Mcix014539.1
Basic Information
- Insect
- Melitaea cinxia
- Gene Symbol
- -
- Assembly
- GCA_905220565.1
- Location
- HG992211.1:1121041-1123380[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.5e-09 2.5e-06 27.8 0.2 4 39 16 51 15 57 0.83 2 2 4.9 1.5e+03 -0.2 0.0 28 44 244 261 243 262 0.88
Sequence Information
- Coding Sequence
- ATGGAACCTCCTTCAAAAAAACGACGAGGACTTTGGTCACTTCAACAATTACGAGCTGCAATGACTGTAGTTCAAGACGGACTGATGTCGCAGCGTGCTGCAGCTGCATATTATTCTATACCCAGAAGAACTTTGGTAAACCATTTAAAATCTGGAAAAGTCGAAAAACAAATAGGACGACGTACGATTTTAACACCAGAACAAGAAAATGATTTGGCGTTAAGGATTAAAAGACTTGCCTCCATAGGATTTCCTTTAACGCCTAATGTTATTCGCCATCAAGCTTTTCTATTTTGCGATCAACAGAAAATTCCTAACAATTTTAATCAAACTTCAAAGCTAGCTGGTAAAGATTGGTTAAAATTATTTTTAAAAAGACATCCCGATATATCAAAGCGCAAGGATCAAATCTTAAACCCAGGACGAGCGCAGAAACTAAATAAGCACATTGTTATGCAGCATTTTACTGAATATAAGAAAATTTACGACGAACTGGAGATAGGGCGACATCCGCAGCGCTTATATAATATGGATGAAAAAGGCTGCCGTCTCACGATTCATAACCAGCCAGTAGTATTGGCACAAAAAGGTATTAAAAGAGTCCATATGGTTGAACCAGAGCATGCAGAGAATGTTACTGTGGCTGTATGTGTAAATGCTTTAGGCAATCCAATACCGCCAATGATATTATTCAAAGGTAAAAGGTTAAAGCCTGAGTTTAATGACAATTTGCCTGCAGGATCACTTGTGAAAATGGCAAAGAAAGGCAGTATGACTTCATCATTATTTGTAGATTTCATACATCACTTGGGAAAATATAAAGCCGCTGGAACGTGTCTTCTTGTATTTGATGGCGCTTCATGTCACTTAGATTATAGTATTGTTGAAGCAGCCGACCATCACGATATTGTATTATATTGCTTGCCGTCAAATACTACGCACGAGCTCCAGCCGCTGGATAAAAGTGTAAACAAATCATTCGAACATCACTGGGACAAAGAAACCTTACTTCATTTATACCAAAACCCTGAAAAAAAAATAACCAAAGCACGATTCAACTCCATTTTTAGTAGGGTTTGGTCAAAATGTATGACATTTGAAAATATAGTAAGCGGATTCAGAGCTACAGGGTTGTATCCTTTGAATCCAGATGCAATACCACAAGAAGCCTACGCACCTTCTATATTAACTGAAAAACAAATAGCACCAGACAACGTAACGACAGAAAACATTCAATCGTTGCACAGACCTTTAGAAGCCTGTCCTAGTTCAATAAATTTAGCAAAGACATCACAAAATCTTGTTGATGATCGTCCACATTCTGAGAAGACAGTTTTTGATCAAAATAGTAATATGCCTTTGGAAAATTCGCCAACTCCTGGTCCTAGTGGTATAAATTACCGGCATGTAGTGAAAAGTCCCGATGTTAGTAGTTTAGATTCTGACATGACCTTTTTTGACGATCATTACTCATATTCACCATCTTTGTTACATCAGAATGACATTTCACCCGCTTTAACTACGACAGCGGTAAAAACACGTTTAGTTGATTACAGCTCATCTGATTCTGATCTTGCAAATTCAAACTCACTAACAGAACTAAGCCAGTATGCTGCATCGATAAGAAGACTAATAATTGATAGCTCTGAATCTGATAATTTTATTGCAGAATCACTTGTTCCGCGACAAAATTTTACGCCTCAAAATATCCGTGATGTATACAGTTCCTTTGTTGATGAAAATGTAGATCCAATATCAAGGCAAGAACAAACTCCCAAGAAGAATACAGCATATACTGACTTCTACAGTATAAGACAAGTACGTGATGGCTCTACAACAGCAAGTGATTCTGAAGACAACTTGCCACTATCGATAATAAAAGCCAAAAAAGTCATACAGTCTCCATTTCAGGAGCTGATACCGACACCGAATTTAGCTGTGGTGAAACAAAATAAGCCAAGACGTAAGGCCATCAATTATAAAGCACGGATTGTAACCAAATATTTGTTTGCTGAAAAAGTTAATGAAAAACACCAACATGAGAAAAAAACAAATAATGAACTGCCACAGCAGGCAAAGGTAAGGACGAAAGGATGTCCAAAAACATTTCGTCCTATTAGAAGAAATAAAGAAAAGAAACAATTTAAAGGACAGGAATTAAAAAATAGAAAACAGAAACGGACACTAAATGACACTTTTGACAAATGGTACTGTCATGCTTGTAATACAGAGAGTTTTAAAGACATGCGACAGTGTCCAATATGTCAAAAATGGTTCCATGAAGAATGCGTGGGCCTGACAAAAGATGATATTGATTTTCAATGCCCTATGTGCAATTAG
- Protein Sequence
- MEPPSKKRRGLWSLQQLRAAMTVVQDGLMSQRAAAAYYSIPRRTLVNHLKSGKVEKQIGRRTILTPEQENDLALRIKRLASIGFPLTPNVIRHQAFLFCDQQKIPNNFNQTSKLAGKDWLKLFLKRHPDISKRKDQILNPGRAQKLNKHIVMQHFTEYKKIYDELEIGRHPQRLYNMDEKGCRLTIHNQPVVLAQKGIKRVHMVEPEHAENVTVAVCVNALGNPIPPMILFKGKRLKPEFNDNLPAGSLVKMAKKGSMTSSLFVDFIHHLGKYKAAGTCLLVFDGASCHLDYSIVEAADHHDIVLYCLPSNTTHELQPLDKSVNKSFEHHWDKETLLHLYQNPEKKITKARFNSIFSRVWSKCMTFENIVSGFRATGLYPLNPDAIPQEAYAPSILTEKQIAPDNVTTENIQSLHRPLEACPSSINLAKTSQNLVDDRPHSEKTVFDQNSNMPLENSPTPGPSGINYRHVVKSPDVSSLDSDMTFFDDHYSYSPSLLHQNDISPALTTTAVKTRLVDYSSSDSDLANSNSLTELSQYAASIRRLIIDSSESDNFIAESLVPRQNFTPQNIRDVYSSFVDENVDPISRQEQTPKKNTAYTDFYSIRQVRDGSTTASDSEDNLPLSIIKAKKVIQSPFQELIPTPNLAVVKQNKPRRKAINYKARIVTKYLFAEKVNEKHQHEKKTNNELPQQAKVRTKGCPKTFRPIRRNKEKKQFKGQELKNRKQKRTLNDTFDKWYCHACNTESFKDMRQCPICQKWFHEECVGLTKDDIDFQCPMCN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00984991;
- 90% Identity
- iTF_00984988;
- 80% Identity
- -